Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0197 ATGGAGGCAGATATTGATACCGTAAATTCATCATCATTATCTTACTACAGCATTCTAGGTGTCGATTCGGATTCTTCTCTTGAAGAAATAAGGCGCGCTTATCGCAAGCTTGCCATGCAATGGCATCCGGATAAGTGGACAAGAACACCTTCTCTACTGGGGGAAGCAAAACGAAAGTTCCAGCAAATTCAGGAAGCCTATTCAGTATTATCGGACAAAAGCAAAAGAACGATGTACGATGCAGGCTTGTACGATCCCCTAGAAGAAGAGGATGAGGGGTTTTATGACTTTGTGGAAGAGCTGAAGACGCAAGTGAGCAGAGAGGAGAAGGAATATAGTTTAGAGGAGTTGCAGGGCATGCTCATGGAAATGGTTCAAGAATTTGAGAATCCTTCATGGCAATTCGGAGCCTCGGCGGTGGATGAGGAAAGCCAGTGCTCGGGGAGGGCTATTCTGGACTTGAACTTGAGGATGAATTTAGGGTCACCTTTTCACGACCCAGGGCTTCATTTGTACGAAACGAGTGGTTACTGTAGTTAG 540 0.4556 MEADIDTVNSSSLSYYSILGVDSDSSLEEIRRAYRKLAMQWHPDKWTRTPSLLGEAKRKFQQIQEAYSVLSDKSKRTMYDAGLYDPLEEEDEGFYDFVEELKTQVSREEKEYSLEELQGMLMEMVQEFENPSWQFGASAVDEESQCSGRAILDLNLRMNLGSPFHDPGLHLYETSGYCS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0197 179 CDD DnaJ 20 72 IPR001623 -
Lele56g0197 179 Pfam DnaJ domain 15 80 IPR001623 -
Lele56g0197 179 SUPERFAMILY Chaperone J-domain 11 86 IPR036869 -
Lele56g0197 179 PANTHER PUTATIVE, EXPRESSED-RELATED 11 134 - -
Lele56g0197 179 Coils Coil 98 118 - -
Lele56g0197 179 ProSiteProfiles dnaJ domain profile. 14 83 IPR001623 -
Lele56g0197 179 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Lele56g0197 179 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lele56g0197 179 PRINTS DnaJ domain signature 34 49 IPR001623 -
Lele56g0197 179 PRINTS DnaJ domain signature 16 34 IPR001623 -
Lele56g0197 179 PRINTS DnaJ domain signature 75 94 IPR001623 -
Lele56g0197 179 Gene3D DnaJ domain 3 110 IPR036869 -
Lele56g0197 179 SMART dnaj_3 13 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0197 Lele-ChrLele56 1645273 1646734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0197 10 81 C2H2 Transcription Factor Family AT1G74250 43.836 9.31e-13 63.5