Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0196 ATGGCTCTTATTACGGGCCTGGTTTCGCTCGTGTTCGATTTTGTTGGTCTTGTCTCAGACAAGATCAATCGGCAGAAGCAGGCAATTTCAAGTGAATCAGAAGAAGCACCGAGATTGATCGAAGTTGATTGGTGCTGTGTGTGTTTGTCAAGGTTAAAGGAGAAAGACGAGATGAAGGTCCTTCCTTGCTTTCACAGATTCCATAAACTGTGTGTAGATAAATGGCTTAATAAGGGTTGCCACAAAACATGTCCTCTGTGTCGTTTCTCAATGGTAGCAGAAGATCAGAATAAGTCTCTTGCTTCTGCTCAATTCACTGAGGATATGCTTGATCCTGTTCATATGGAATTTATTTCGCCACCTAACTTGTGCTATTGGTGA 381 0.4226 MALITGLVSLVFDFVGLVSDKINRQKQAISSESEEAPRLIEVDWCCVCLSRLKEKDEMKVLPCFHRFHKLCVDKWLNKGCHKTCPLCRFSMVAEDQNKSLASAQFTEDMLDPVHMEFISPPNLCYW 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0196 126 Pfam Ring finger domain 44 88 IPR001841 -
Lele56g0196 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 94 IPR013083 -
Lele56g0196 126 PANTHER TARGET OF ERK KINASE MPK-1 31 94 - -
Lele56g0196 126 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Lele56g0196 126 SUPERFAMILY RING/U-box 44 94 - -
Lele56g0196 126 SMART ring_2 45 87 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0196 Lele-ChrLele56 1642638 1643350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0196 45 95 C3H Transcription Factor Family AT5G45290 47.059 6.07e-13 62.4