Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0193 ATGGATTTTCTCGCAAATCCATGTCCTTTGCCTCTCTCTGTGCTGTTTTCGTTCCATAATTTCGTTGAAAGGACGAAACAGATTAGCAGTCTCGCGATTTCTGCCATCGTGGGGAACATCTTCTCTGCGATCTTGACCTTCTTCTTCGCATTAGTTGGAACGTTGTTGGGAGCTATGACTGGAGCGTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTAGGAGCCATATCAGGAGCTGTGTTTTCCCTTGAAGTGTTTGAATCTTCTCTTGTTCTGTGGCAAACCGACGAATCTGGGATTGGGTGTCTCTTGTACTTGATTGACGTTATTACTAGCCTACTGAGTGGGAGACTTGTCCGTGAGAGGATTGGTCCAGCCATGCTAAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAGCCAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAGGCGCCAAAGGTTTATCAGGAGATTTGGTTGAAAAAATTCCAATAATAACAATCACAGGTGACTACAGTGTTGATGCTTGTGGTGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAAATTGCCTCATTGTCATCACATGTTTCACCTACCTTGTATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTATGCAGAAGAGATCTGTAA 708 0.4506 MDFLANPCPLPLSVLFSFHNFVERTKQISSLAISAIVGNIFSAILTFFFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSLEVFESSLVLWQTDESGIGCLLYLIDVITSLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEIQNLFDTGGAKGLSGDLVEKIPIITITGDYSVDACGERVSCSVCLQDFQLGETVRKLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0193 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Lele56g0193 235 SMART ring_2 190 231 IPR001841 -
Lele56g0193 235 CDD RING-H2_PA-TM-RING 190 232 - -
Lele56g0193 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Lele56g0193 235 SUPERFAMILY RING/U-box 183 235 - -
Lele56g0193 235 Pfam Ring finger domain 189 232 IPR001841 -
Lele56g0193 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lele56g0193 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0193 Lele-ChrLele56 1626967 1629405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0193 11 235 C3H Transcription Factor Family AT5G66070 73.333 2.24e-115 327