Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0140 ATGAATTCCTGTTCGGTGGCTCATGGCTGCTATTCCTGGTCGGCAAAACATGAAGTCATGAATACAAATAAAAAATGGTGGTCGAGTCAACGATTGAATATTAAAAATGGGGCAAAAAGGCCTGACCCGGCCCGTATCTTCCACTTGAAGACTGAAGAATTTTGCTTCCACCAAAACCCTAGCGGCCACTCGCTCTTGCGATTTCTTTTAGCAGCCATGGCGGATGTTGAGGCCGATGTCGCCCCAGGAGTGCCAAAGAAGAGAACGTTCAAAAAGTTCAGCTTCAGAGGCGTTGATTTGGACGCTCTTCTGGACATGTCCACTGATGAGCTTGTCAAGCTCTTCACTGCCCGAGCTCGCAGAAGGTTTCAGAGAGGACTGAAGAGGAAGCCTATGGCCTTGATTAAGAAGCTGCGCAAAGCGAAAAGGGAGGCTCCACCAGGTGAAAAGCCAGAACCTGTTCGCACCCACCTGCGGAACATGATTATTGTACCTGAGATGATTGGGAGCATAATTGGAGTGTACAATGGCAAGACTTTCAACCAGGTTGAAATTAAACCTGAGATGATTGGCCATTACTTGGCTGAGTTCTCAATTTCATACAAGCCTGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCATCAAGGTTCATTCCTCTCAAGTGA 672 0.4777 MNSCSVAHGCYSWSAKHEVMNTNKKWWSSQRLNIKNGAKRPDPARIFHLKTEEFCFHQNPSGHSLLRFLLAAMADVEADVAPGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0140 223 PRINTS Ribosomal protein S19 family signature 188 203 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 PRINTS Ribosomal protein S19 family signature 156 175 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 PRINTS Ribosomal protein S19 family signature 176 188 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 TIGRFAM uS19_arch: ribosomal protein uS19 90 223 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lele56g0140 223 Hamap 30S ribosomal protein S19 [rpsS]. 119 212 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 ProSitePatterns Ribosomal protein S19 signature. 176 200 IPR020934 GO:0003723
Lele56g0140 223 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 83 223 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 FunFam 40S ribosomal protein S15 80 223 - -
Lele56g0140 223 Pfam Ribosomal protein S19 121 206 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 Gene3D 30s Ribosomal Protein S19; Chain A 82 223 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele56g0140 223 SUPERFAMILY Ribosomal protein S19 127 207 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0140 Lele-ChrLele56 1321901 1323571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0140 73 223 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.755 3.57e-91 263