Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0139 ATGAAGGAATATCAGGAAAGAGCAAATAAACTGAGGAGGTTGGATGCAGAAATGGAGGTATTGGAAACAGAACTGAAGACATTGAAGGCAGAGATTATCAAAAAGGAGGAAGATCTAGCAAACAAGGGGCGAGAACTTGAAGGGGCGAGAGCAGTTTTGAAGAAAGCCGAGGAAGAATTTCAAGAAAAAAGAATTCGATTTAAACGCAACAATTGGAGTGCATTAGAAATAGACTATCCTCTTCATAGAAACCTCCAACAAATTAATGCTGATTCTGATTCAGTTGAAATCTTGCATGAGAAACCTCCTCTGCATAAAGTAGCTAGCCAAAAACCGCCATTATCATCTTCTGTTCGCCCTTGCAAGAAAATTAGAGCTGAAAGGACTTCTAATCCGCCAAAGATGCACTCAAATAGGAATAAGCTTGAGTCCATTCAAGCAGAACCAAGTCTTATCAAGCTTGAATCAGAAGAATCCGTGGGTAGAAGCAAGTTTTCCACTAAAAGAAGTTCAAAATCCATGGCTATCAAAAAACGAAACAAGAAACCATTAACCTTTGATGAGAAGAACAGAGCTTTACAGAGAGTCAACATTTTCACGCCCAAAAATCCCTATTTCAAAATTGTCATGCAGCCAGCATACATCAGGAGCGATTTGTCGGTACCAGCAAGTTTTGTGAAACAGTATTTGAAGCAGGAGGAGGAAGGAGATGTCCTTCTCCGGGTTTCAGATGGCAGAACATGGCGTGTGAAGTGCAATAGGCAAGAAGGAAATCAGCTCAAGTTCCGACTCAGGAGAGGGTGGCACTCTCTTGCAAAAGACAATAACTTGAATGTGGGTGATGTGTGTGTTTTTGAACTAACAAACCCCGTAGACATCTCCTTCATAGTTCATGTCTTTGGAGTCCATCTGGCTGAAAATTCCAAAAGTATACCATTGTTAACGGAATATGGCAATACTGATAGAGATACTATATATGTTAAGAATTCACATACTTTGTTTCATTATTCTGCTCAGAAAGTACCGGACAGCTTTATACGAAAATATGGAGGTGTCATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGGATTCAATGGGAAATACATTGGACAAAATATGTAAGTGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTTAGATACTACTCATTAGGTCATGGCCATTTGGTGGTTTTCAGATATGAGGGAACTAGAACTACTTGTTACTTTGAGGTCAACATTTTTGACAAGAGTGCATTAGAAATAGACTATCCTCTTCATATAAACCTACAACAAATCAATGATGATACTGGTTCTGTTGAAATCTTGCATGAGAAGCCTCCTGTGCATAAAATAGCTAGCCAAAAACTGCCACTATCATCTTCTAGTCGCCCTTGCAAGAAAATTAGAGCTGGAGAAGTTGAAAGGATGTCTAATCAGCAAAAGATGCACTCAGATGGAAATAAGCTGAAGTCCATTAAAGCAGAACCGTATCTTATCAAGCTTGAATCAGAAGAATCCGTGGGTAGAAGCAATTTTTCCACTAAAAGAAGTTCAAAATCCATGGCTATCAAAAAACGAAACGAGAAACCATTAACTTTTGATGAGAAGAACAGAGCTTTACAGAGAGTCAACATTTTCACGCCCAAAAATCCCTATTTCAAAATTGTCATGCAGCCAGCATACATCAGGAGCGATTTGTCGGTACCAACAAGTTTTGTGAAACAGTATTTGAAGCAGGAGGAGGAAGGAGATGTCCTTCTCCGGGTTTCAGATGGCAGAACATGGCGTGTGAAGTGCAATAGGCAAGAAGGAAATCAGCACAAGTGCCGACTCAGGAGTGGGTGGCACTCTTTTGCAAAAGACAATAACTTGAATGTGGGTGATGTGTGTGTTTTTGAACTCACAAAGCCCGTAGACATCTCCTTCATAGTTCATGTCTTTGGAGATTCTGCGACTCCATATGGCTGA 1980 0.4035 MKEYQERANKLRRLDAEMEVLETELKTLKAEIIKKEEDLANKGRELEGARAVLKKAEEEFQEKRIRFKRNNWSALEIDYPLHRNLQQINADSDSVEILHEKPPLHKVASQKPPLSSSVRPCKKIRAERTSNPPKMHSNRNKLESIQAEPSLIKLESEESVGRSKFSTKRSSKSMAIKKRNKKPLTFDEKNRALQRVNIFTPKNPYFKIVMQPAYIRSDLSVPASFVKQYLKQEEEGDVLLRVSDGRTWRVKCNRQEGNQLKFRLRRGWHSLAKDNNLNVGDVCVFELTNPVDISFIVHVFGVHLAENSKSIPLLTEYGNTDRDTIYVKNSHTLFHYSAQKVPDSFIRKYGGVMPNPVFLKPPDGIQWEIHWTKYVSGEVWFEKGWDEVVRYYSLGHGHLVVFRYEGTRTTCYFEVNIFDKSALEIDYPLHINLQQINDDTGSVEILHEKPPVHKIASQKLPLSSSSRPCKKIRAGEVERMSNQQKMHSDGNKLKSIKAEPYLIKLESEESVGRSNFSTKRSSKSMAIKKRNEKPLTFDEKNRALQRVNIFTPKNPYFKIVMQPAYIRSDLSVPTSFVKQYLKQEEEGDVLLRVSDGRTWRVKCNRQEGNQHKCRLRSGWHSFAKDNNLNVGDVCVFELTKPVDISFIVHVFGDSATPYG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0139 659 CDD B3_DNA 327 419 IPR003340 GO:0003677
Lele56g0139 659 CDD B3_DNA 555 651 IPR003340 GO:0003677
Lele56g0139 659 PANTHER B3 DOMAIN-CONTAINING 73 288 - -
Lele56g0139 659 SUPERFAMILY DNA-binding pseudobarrel domain 199 301 IPR015300 -
Lele56g0139 659 CDD B3_DNA 204 300 IPR003340 GO:0003677
Lele56g0139 659 Gene3D - 535 654 IPR015300 -
Lele56g0139 659 Gene3D - 184 303 IPR015300 -
Lele56g0139 659 ProSiteProfiles B3 DNA-binding domain profile. 555 654 IPR003340 GO:0003677
Lele56g0139 659 Pfam B3 DNA binding domain 339 420 IPR003340 GO:0003677
Lele56g0139 659 Pfam B3 DNA binding domain 557 651 IPR003340 GO:0003677
Lele56g0139 659 Pfam B3 DNA binding domain 206 300 IPR003340 GO:0003677
Lele56g0139 659 ProSiteProfiles B3 DNA-binding domain profile. 204 303 IPR003340 GO:0003677
Lele56g0139 659 Coils Coil 1 66 - -
Lele56g0139 659 Gene3D - 321 422 IPR015300 -
Lele56g0139 659 SMART B3_2 326 421 IPR003340 GO:0003677
Lele56g0139 659 SMART B3_2 205 303 IPR003340 GO:0003677
Lele56g0139 659 SMART B3_2 556 654 IPR003340 GO:0003677
Lele56g0139 659 SUPERFAMILY DNA-binding pseudobarrel domain 330 421 IPR015300 -
Lele56g0139 659 ProSiteProfiles B3 DNA-binding domain profile. 324 421 IPR003340 GO:0003677
Lele56g0139 659 MobiDBLite consensus disorder prediction 125 148 - -
Lele56g0139 659 SUPERFAMILY DNA-binding pseudobarrel domain 550 652 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0139 Lele-ChrLele56 1314815 1320428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0139 340 651 B3 DNA Binding Superfamily AT3G18990 27.711 2.49e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele56g0139 B3 1.4e-19 CL0405