Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0130 ATGGCGATGGCGAGGGAGATAGAGGAGGAAGGAGACGTACAGAACAACGCAGGCAAGAGGCTGAAATGCATGAAGAATGAGAAGGTTCAACCAGAGGAGGAAGCTGCGGAAGATGAAAGTGAGCTTCCTCTCCAGCCCGGCCTCTTCTTCTATCCAACTACTCCTACGTCTTTCGTTGTCTCCGATGCTCTTGAACCGGATTTTCCCATCATCTATGTCAACAAGGTCTTTGAACTCGTCACCGGCTATCGCGCCGATGAGGTTTTGGGTCGGAACTGTCGGTTCTTACAGTATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGCATTCCTTTAGTGAACAGGCTGAAACTTGCTCCAATTCATGATGATAATGGGACTATGACACATGTAATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATCTAAATCGTGTCTCATATCCGGTGTTCAAGGAGACCTGCAATCAGGAAATTGACAAGACTGGTAAAAATTCTATTAAGAGTGGACGACCATTATACAGCCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTCTTGGCTCATAACATCTTGTCACGCCTGACACCAAGGGATGTTGCATCGATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACACAGAATGAGCATGTTAGAAAGATGGTGTGTCAAAATGCGTGGGGAAAAGAAGTGACCGGTGCACTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTTAGCCGAGAACTAACCACTCTTGAGGCTGTTCGTTGGAGAAAACTGACAGTAGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGCCTTGTATTGTTCGGGGGTGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGTAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCCTGCTTAAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGTAGGGAAGGATTGCTTAATGACGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACGTGGAAAGAAGTCTGTGGTGGAACTCCGCCTCTCCCTAGATCTTGGCACAGCTCTTGCACTGTTGAAGGGTCTAAATTGGTAGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGATACATACCTACTGGACCTTACTACGGAGAATCCAACATGGAGGGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGATTGGGGCACTCACTCTCTGTATATGGAAGGACAAAAATTCTTATGTTTGGTGGACTTGCCAAGAGCGGACACTTGCGATTACGATCAGGGGAGGCTTATACAATTGACTTGGAAGATGAAGAGGCTCAGTGGAGGCAGCTAGAATATAGCGCATTCTCTGGAATGGGTGGTCAAAGTGCTGTTGTTCCTCTACCTCGGCTGGATCATGTCGCAGTGAGCATGCCTTGTGGGAGGATCATTATTTTTGGAGGCTCCATTACAGGGCTTCACTCTCCATCCCAGCTCTTTCTTTTGGACCCATCTGAGGAGAAACCATCATGGAGGATCCTCAATGTGCCGGGGCAACCCCCAAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGACGTACAGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCAAGCAGGACTCCGACCTAAGGTGA 1887 0.4769 MAMAREIEEEGDVQNNAGKRLKCMKNEKVQPEEEAAEDESELPLQPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFELVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGIPLVNRLKLAPIHDDNGTMTHVIGIQLFSEANIDLNRVSYPVFKETCNQEIDKTGKNSIKSGRPLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTQNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVRWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTYLLDLTTENPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEAQWRQLEYSAFSGMGGQSAVVPLPRLDHVAVSMPCGRIIIFGGSITGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGRTGEEWILNELHELCLASKQDSDLR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0130 628 Gene3D PAS domain 51 176 - -
Lele56g0130 628 Pfam Galactose oxidase, central domain 373 419 - -
Lele56g0130 628 Pfam Galactose oxidase, central domain 422 473 - -
Lele56g0130 628 Pfam F-box domain 214 251 IPR001810 GO:0005515
Lele56g0130 628 FunFam Putative LOV domain-containing protein 491 623 - -
Lele56g0130 628 SUPERFAMILY Galactose oxidase, central domain 294 612 IPR011043 -
Lele56g0130 628 TIGRFAM sensory_box: PAS domain S-box protein 69 164 IPR000014 -
Lele56g0130 628 MobiDBLite consensus disorder prediction 1 32 - -
Lele56g0130 628 Gene3D - 286 490 IPR015915 GO:0005515
Lele56g0130 628 Pfam PAS domain 64 164 IPR000014 -
Lele56g0130 628 Gene3D - 491 623 IPR015915 GO:0005515
Lele56g0130 628 FunFam Adagio protein 1 47 176 - -
Lele56g0130 628 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 39 621 - -
Lele56g0130 628 Pfam Galactose oxidase, central domain 308 358 - -
Lele56g0130 628 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Lele56g0130 628 CDD PAS 54 164 IPR000014 -
Lele56g0130 628 SUPERFAMILY F-box domain 206 266 IPR036047 GO:0005515
Lele56g0130 628 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Lele56g0130 628 MobiDBLite consensus disorder prediction 1 41 - -
Lele56g0130 628 Gene3D - 207 258 - -
Lele56g0130 628 ProSiteProfiles PAS repeat profile. 70 101 IPR000014 -
Lele56g0130 628 FunFam Putative LOV domain-containing protein 285 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0130 Lele-ChrLele56 1256075 1259790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0130 57 178 AGC Kinase Gene Family AT5G58140 35.484 1.44e-15 78.6