Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele56g0129 | ATGGAACGATGTTATCCGCAGGAATATGTAATCCCAGACAGTAATGTTGATGTCTTACAAGTTATAACTACGAAGCTAGAAAAGTCAACCCAGAACTTCCATTTCTTTTTCCTTTCTTGCTGGGCTGTCCGTGGCTTTGCTGTGTCAGATTTTGCTGCAATGGCTGCTTTGCACAGGGTGACACACTCAAGCATGACCACCAGTGTGAGCAGCTATGGCACCTGCAAAGGTGGTGGTGCTGCAGCTATTGAGAAGGCAGTTCCTGATAAGTTCCCAGCTGGTCTGAGGGTTCTCGTCGTGGATGATGACATCACTACTTTGAAAATCATTGAACAAATGTCTCTTAAGTGTCATTATCGAGTCACCACATGTTCTGAGGCTACTGTTGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGCTTTGATGTAGTACTGAGTGATGTTTATATGCCTGATATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAATAAAGAACACGAAAATTCTGGCAGCTTGGAAGATAATGACAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGCGGCAGAAGTAGTTAAGGTGCCAAAAAAGAGGATCAGTTCAAAAGAAGATGATGATGGCGAACCGGATAATGATGATCCATCCACATCTAAGAAGCCCCGTGTGGCCTGGTCGGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTTGGGCTTGACAAAGCTGTACCAAAGAGAATTCTCGAACTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCCAGTCATCTGCAGAAATTTAGGCTTTACTTGAAGAGAATAAGTGGAGTGGCACAGCAACAGAATGGGATTCCAAACACAGTCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCTGCCGGTCAAGTTCCTCCTCAAACACTAGCAGCCCTTCATGCAGAACTCTTAGGTCATCCAGCCACTAGCTTGATGTCGACAGTGGACCAGACTGCTCTTCTGCAAGCTTCCATACAGGGTCCCAAGCATTCCCATGCAGAACATGCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGATGCATCTTCAGGCTATGGAGCATGGCCACCATCTGATACAATTGGTTCAATGGGACCCAATAGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGATGATGGATATGCTGCAGCACCATCAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAACTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCACTCAATGTTCAACCATCTTGCCTGGTGTCTCCCTCTCAAACTTCGGGCACTTTCCATGTCAACGGTCCTGCTTCTGTCAACCAGAATTCCAATTTGGCTAGGAATGCCCTTATGGATTATAGTCTCTTTGCACCCCAATGGAATCATCCTTCATTAAATTTTGCTCAATTTCCTGGTGGGGACACCAAAGTTAAAGGTGTTCTTTGTGGTTACGTGGCTCCAGGCTCCATTTCGCATTCAACATCATCACATTCAGTAAGTGCTAACAATAACAATATCCAACAGCTCCACAACTCATCTTTGACATTCGGAACCGTGAGACCTTTGCCAACTCTCTCATCAAATTTGTCTGATACACAAGTTCCCTATGGTGATACTAAATCTGGTGATGCCATTGATCAAGCACATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCAAGTAGGTTTGCTGCTCATGAAATTGAGTCATCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAAACATGGATTTTATGGATAACTCAAAAGTGGGCGCCCCAGTCTTACAAAGATATCCATCTGATCCCATGAATGTGTTCACTGAATAG | 2181 | 0.4392 | MERCYPQEYVIPDSNVDVLQVITTKLEKSTQNFHFFFLSCWAVRGFAVSDFAAMAALHRVTHSSMTTSVSSYGTCKGGGAAAIEKAVPDKFPAGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKQGNDDTEYASSVIDAAEVVKVPKKRISSKEDDDGEPDNDDPSTSKKPRVAWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTVSGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGHPATSLMSTVDQTALLQASIQGPKHSHAEHAVAYGQPLVKCPSNIAKNFPQSILTVDDASSGYGAWPPSDTIGSMGPNSNHGRVSVQNNNMMMDMLQHHQRQQFQQTQQHKLQQQSLMHDQSRSLNVQPSCLVSPSQTSGTFHVNGPASVNQNSNLARNALMDYSLFAPQWNHPSLNFAQFPGGDTKVKGVLCGYVAPGSISHSTSSHSVSANNNNIQQLHNSSLTFGTVRPLPTLSSNLSDTQVPYGDTKSGDAIDQAHVRNLGFVGQGSSIPSRFAAHEIESSVSDLSQGKIPLDSNGNTVKQEPNMDFMDNSKVGAPVLQRYPSDPMNVFTE | 726 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele56g0129 | 726 | MobiDBLite | consensus disorder prediction | 220 | 243 | - | - | |
Lele56g0129 | 726 | FunFam | Two-component response regulator | 276 | 339 | - | - | |
Lele56g0129 | 726 | Pfam | Response regulator receiver domain | 97 | 206 | IPR001789 | GO:0000160 | |
Lele56g0129 | 726 | MobiDBLite | consensus disorder prediction | 220 | 238 | - | - | |
Lele56g0129 | 726 | FunFam | Two-component response regulator | 95 | 232 | - | - | |
Lele56g0129 | 726 | PIRSF | RR_ARR_type-B | 75 | 716 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Lele56g0129 | 726 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 95 | 465 | IPR045279 | GO:0009736 | |
Lele56g0129 | 726 | Gene3D | - | 95 | 265 | - | - | |
Lele56g0129 | 726 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 277 | 336 | IPR017930 | - | |
Lele56g0129 | 726 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 280 | 333 | IPR006447 | GO:0003677 | |
Lele56g0129 | 726 | SUPERFAMILY | Homeodomain-like | 277 | 337 | IPR009057 | - | |
Lele56g0129 | 726 | CDD | REC_typeB_ARR-like | 97 | 211 | - | - | |
Lele56g0129 | 726 | Gene3D | - | 276 | 339 | - | - | |
Lele56g0129 | 726 | Pfam | Myb-like DNA-binding domain | 282 | 330 | IPR001005 | - | |
Lele56g0129 | 726 | ProSiteProfiles | Response regulatory domain profile. | 96 | 211 | IPR001789 | GO:0000160 | |
Lele56g0129 | 726 | MobiDBLite | consensus disorder prediction | 679 | 698 | - | - | |
Lele56g0129 | 726 | SUPERFAMILY | CheY-like | 94 | 219 | IPR011006 | - | |
Lele56g0129 | 726 | MobiDBLite | consensus disorder prediction | 257 | 280 | - | - | |
Lele56g0129 | 726 | SMART | REC_2 | 95 | 207 | IPR001789 | GO:0000160 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele56g0129 | Lele-ChrLele56 | 1247654 | 1254449 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele56g0129 | 129 | 394 | Response Regulator Gene Family | AT3G16857 | 54.895 | 8.65e-93 | 300 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Lele56g0129 | Response_reg | 3e-21 | CL0304 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele53g1351 | 53 | 21712787 | 21716445 | Lele56g0129 | 56 | 1247654 | 1254449 | hybridization | |
Lele54g1325 | 54 | 18315461 | 18322635 | Lele56g0129 | 56 | 1247654 | 1254449 | hybridization |