Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0129 ATGGAACGATGTTATCCGCAGGAATATGTAATCCCAGACAGTAATGTTGATGTCTTACAAGTTATAACTACGAAGCTAGAAAAGTCAACCCAGAACTTCCATTTCTTTTTCCTTTCTTGCTGGGCTGTCCGTGGCTTTGCTGTGTCAGATTTTGCTGCAATGGCTGCTTTGCACAGGGTGACACACTCAAGCATGACCACCAGTGTGAGCAGCTATGGCACCTGCAAAGGTGGTGGTGCTGCAGCTATTGAGAAGGCAGTTCCTGATAAGTTCCCAGCTGGTCTGAGGGTTCTCGTCGTGGATGATGACATCACTACTTTGAAAATCATTGAACAAATGTCTCTTAAGTGTCATTATCGAGTCACCACATGTTCTGAGGCTACTGTTGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGCTTTGATGTAGTACTGAGTGATGTTTATATGCCTGATATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAATAAAGAACACGAAAATTCTGGCAGCTTGGAAGATAATGACAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGCGGCAGAAGTAGTTAAGGTGCCAAAAAAGAGGATCAGTTCAAAAGAAGATGATGATGGCGAACCGGATAATGATGATCCATCCACATCTAAGAAGCCCCGTGTGGCCTGGTCGGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTTGGGCTTGACAAAGCTGTACCAAAGAGAATTCTCGAACTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCCAGTCATCTGCAGAAATTTAGGCTTTACTTGAAGAGAATAAGTGGAGTGGCACAGCAACAGAATGGGATTCCAAACACAGTCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCTGCCGGTCAAGTTCCTCCTCAAACACTAGCAGCCCTTCATGCAGAACTCTTAGGTCATCCAGCCACTAGCTTGATGTCGACAGTGGACCAGACTGCTCTTCTGCAAGCTTCCATACAGGGTCCCAAGCATTCCCATGCAGAACATGCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGATGCATCTTCAGGCTATGGAGCATGGCCACCATCTGATACAATTGGTTCAATGGGACCCAATAGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGATGATGGATATGCTGCAGCACCATCAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAACTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCACTCAATGTTCAACCATCTTGCCTGGTGTCTCCCTCTCAAACTTCGGGCACTTTCCATGTCAACGGTCCTGCTTCTGTCAACCAGAATTCCAATTTGGCTAGGAATGCCCTTATGGATTATAGTCTCTTTGCACCCCAATGGAATCATCCTTCATTAAATTTTGCTCAATTTCCTGGTGGGGACACCAAAGTTAAAGGTGTTCTTTGTGGTTACGTGGCTCCAGGCTCCATTTCGCATTCAACATCATCACATTCAGTAAGTGCTAACAATAACAATATCCAACAGCTCCACAACTCATCTTTGACATTCGGAACCGTGAGACCTTTGCCAACTCTCTCATCAAATTTGTCTGATACACAAGTTCCCTATGGTGATACTAAATCTGGTGATGCCATTGATCAAGCACATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCAAGTAGGTTTGCTGCTCATGAAATTGAGTCATCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAAACATGGATTTTATGGATAACTCAAAAGTGGGCGCCCCAGTCTTACAAAGATATCCATCTGATCCCATGAATGTGTTCACTGAATAG 2181 0.4392 MERCYPQEYVIPDSNVDVLQVITTKLEKSTQNFHFFFLSCWAVRGFAVSDFAAMAALHRVTHSSMTTSVSSYGTCKGGGAAAIEKAVPDKFPAGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKQGNDDTEYASSVIDAAEVVKVPKKRISSKEDDDGEPDNDDPSTSKKPRVAWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTVSGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGHPATSLMSTVDQTALLQASIQGPKHSHAEHAVAYGQPLVKCPSNIAKNFPQSILTVDDASSGYGAWPPSDTIGSMGPNSNHGRVSVQNNNMMMDMLQHHQRQQFQQTQQHKLQQQSLMHDQSRSLNVQPSCLVSPSQTSGTFHVNGPASVNQNSNLARNALMDYSLFAPQWNHPSLNFAQFPGGDTKVKGVLCGYVAPGSISHSTSSHSVSANNNNIQQLHNSSLTFGTVRPLPTLSSNLSDTQVPYGDTKSGDAIDQAHVRNLGFVGQGSSIPSRFAAHEIESSVSDLSQGKIPLDSNGNTVKQEPNMDFMDNSKVGAPVLQRYPSDPMNVFTE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0129 726 MobiDBLite consensus disorder prediction 220 243 - -
Lele56g0129 726 FunFam Two-component response regulator 276 339 - -
Lele56g0129 726 Pfam Response regulator receiver domain 97 206 IPR001789 GO:0000160
Lele56g0129 726 MobiDBLite consensus disorder prediction 220 238 - -
Lele56g0129 726 FunFam Two-component response regulator 95 232 - -
Lele56g0129 726 PIRSF RR_ARR_type-B 75 716 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele56g0129 726 PANTHER TWO-COMPONENT RESPONSE REGULATOR 95 465 IPR045279 GO:0009736
Lele56g0129 726 Gene3D - 95 265 - -
Lele56g0129 726 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 336 IPR017930 -
Lele56g0129 726 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 280 333 IPR006447 GO:0003677
Lele56g0129 726 SUPERFAMILY Homeodomain-like 277 337 IPR009057 -
Lele56g0129 726 CDD REC_typeB_ARR-like 97 211 - -
Lele56g0129 726 Gene3D - 276 339 - -
Lele56g0129 726 Pfam Myb-like DNA-binding domain 282 330 IPR001005 -
Lele56g0129 726 ProSiteProfiles Response regulatory domain profile. 96 211 IPR001789 GO:0000160
Lele56g0129 726 MobiDBLite consensus disorder prediction 679 698 - -
Lele56g0129 726 SUPERFAMILY CheY-like 94 219 IPR011006 -
Lele56g0129 726 MobiDBLite consensus disorder prediction 257 280 - -
Lele56g0129 726 SMART REC_2 95 207 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0129 Lele-ChrLele56 1247654 1254449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0129 129 394 Response Regulator Gene Family AT3G16857 54.895 8.65e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele56g0129 Response_reg 3e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1351 53 21712787 21716445 Lele56g0129 56 1247654 1254449 hybridization
Lele54g1325 54 18315461 18322635 Lele56g0129 56 1247654 1254449 hybridization