Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0119 ATGAAGTTCAACATTGCTAATCCCACCACTGGGTGCCAGAAGAAGCTTGAAATTGATGATGATGCTAAACTCCGAGCATTTTGGGACAAGAGGATATCACAAGAAGTCAGTGGAGATGCCCTGGGTGAGGAGTTTAAGGGCTATGTTTTCAAAATAACTGGAGGATGTGACAAGCAGGGCTTTCCAATGAAGCAGGGAGTGTTAACTCCTGGCCGTGTTCGTCTCTTGCTGCACAGAGGAACTCCTTGCTTCCGTGGCTATGGCAGAAGGAATGGAGAGAGGAGAAGGAAGTCTGTTCGGGGTTGCATCGTCAGTCCAGACCTCTCTGTTCTTAACTTGGTTATTGTGAAGAAAGGTGAGAATGATCTTCCGGGATTGACTGACATCGAGAAGCCTAGAATGAGAGGGCCAAAGAGGGCTTCCAAGATTAGGAAATTGTTCAATCTCTCCAAGGAGGATGACGTGCGCAAATATGTCAACACATACCGCAGAACCTTTACGACCAAAGCTGGCAAGAAGGTGAGCAAAGCTCCCAAAATTCAGAGGTTGGTTACTCCCTTGACTTTGCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAGGCTGCTGAATATCAAAAGCTGCTTGCCAGCCGGTTGAAGGAACAGCGTGACCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAAGCTGTCACATGCATCTAAGCCATCAGGTTGTTGGTGGCTTAAGGTTTCAAAACTTCAGAACTTCGAATTTATGACAGTAAGCTTTCGATCTTCTTGTCAATCTGAGCCGTTAGATCACGTATCCACCCCTCAAGCAGTCAAGCTGTTCCTTACAAAACCCTACTTTCAGACTTGGCTCAATTCCTCTAGCTCGCCCAGAAAGATTAACCCTAGTTTGAGCTCCTTCAACATTGCCAACCCCACCACTGGGTGCCAGAAGAAGCTTGAAATCGATGATGATGCTAAACTCCGAGCTTTCTGGGACAAGAGGATATCACAAGAAGTCAGTGGAGATGCACTGGGGGAGGAGTTTAAGGGCTATGTTTTCAAAATCACTGGAGGCTGTGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTGCTGACTCCTGGACGTGTTCGTCTCTTGCTTCACAGAGGAACTCCTTGCTTTCGTGGTTATGGCAGAAGGAATGGAGAGAGGAGAAGGAAGTCTGTTCGGGGTTGCATTGTCAGTCCAGACCTCTCTGTTCTTAACTTGGTTATTGTGAAGAAGGGTGAGAATGATCTTCCAGGATTGACTGACATTGAGAAGCCGAGAATGAGAGGGCCAAAGAGGGCTTCCAAGATTAGGAAATTGTTCAATCTCTCCAAGGAGGATGATGTGCGCAAATATGTTAACACATACCGCAGAACCTTTACTACCAAAACTGGCAAGAAGGTGAGCAAAGCTCCCAAGATTCAGAGGTTGGTTACTCCCTTGACTTTGCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAGGCTGCTGAATATCAAAAGCTGCTTGCCAGCCGGTTGAAGGAACAGCGTGAACGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAGGCTGTCTCATGCATCTAAGCCATCAGTTACCGCTTAA 1680 0.475 MKFNIANPTTGCQKKLEIDDDAKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSHASKPSGCWWLKVSKLQNFEFMTVSFRSSCQSEPLDHVSTPQAVKLFLTKPYFQTWLNSSSSPRKINPSLSSFNIANPTTGCQKKLEIDDDAKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSRLSHASKPSVTA 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0119 559 ProSitePatterns Ribosomal protein S6e signature. 362 373 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 MobiDBLite consensus disorder prediction 532 559 - -
Lele56g0119 559 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 SMART Ribosomal_S6e_2 311 438 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 Coils Coil 499 526 - -
Lele56g0119 559 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 Coils Coil 189 216 - -
Lele56g0119 559 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 Hamap 30S ribosomal protein S6e [rps6e]. 12 427 IPR020924 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 Pfam Ribosomal protein S6e 313 438 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele56g0119 559 MobiDBLite consensus disorder prediction 532 547 - -
Lele56g0119 559 Gene3D - 133 234 - -
Lele56g0119 559 Gene3D - 443 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0119 Lele-ChrLele56 1168074 1173396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0119 313 559 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.660 1.25e-113 334