Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0112 ATGCAGAGCCAGCCCCAGCACCACCCTGTGGCTTTGAGGTTCCATGAGCAAACGGGGAGTAAAAGAAAATACACTTTCATTCAGGCTAAAAGAGCTTGGCTCCCAAAGTTTCTGCTGCTGTGGATCATGATGATGATGCTATTCAGTGGGTCCATCTACAATGCTATGGATGCTGATAATAAAGTTAGGAGGAGAGAGGTTCTGGGTAGCCTCTGTGAGCAACGGGCCAGGATGTTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTCCATGCCCTAGCTATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCTGCAATTGATCAGGAAACCTTTGCGGAGTATACGGTCAGAACAGCATTTGAGCGGCCATTACTGAATGGGGTGGCTTATGCACAAAGGGTAGTTGACTCCGGAAGAGAAAACTTTGAGAGCCAACACGGATGGGTGATAAAGACTATGGAGAGGGAGCCTTCCCCCATTCGAGATGAGTATGCCCCAGTGATATTTGCCCAAGAAACCATCTCTTATCTTAAGTCTCTTGATATGATGTCAGGGGAGGAGGACCGAGAGAACATTCTGAGGGCTAGGGCCACTGGGAAAGCTGTACTGACTAGCCCATTCAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTCCCTGTTTACAAATCCAAGCTCTCCCCAGAGCCGACTATGAAAGAGCGCATAGAGGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTCGAGTCCCTTGTGGAGAATTTACTTGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTGCATGTGTATGATATCACAAACTCTACTTACCCGCTAATCATGTATGGCAACCAATATGAAGGTGACAAGTCTCTTGTACATAAGAGCAAGCTTGACTTTGGAGATCCTTACAGGAAACATCAGATGATATTGGGATACATTTTATATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAGATGCAGGAACTAAAAGTTCGAGCTGAAGCTGCTGATGTTGCCAAATCCCAGTTTTTAGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATCTTAGGAATGCTTGGTCTGCTTCTTGATACGGAATTGAGTTCAACTCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAAGCACTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAAGCAGTTCCATTTGACCTGCGTTCCATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGTTTAGAGTTTACTTACATAGTTCTTTCTTTGTTTCATCTTTCTGGGTCTGATGTCACTGGATGCTGTTGAGATCCAGGGAGATTCAGACAAATAATAACCAATCTAGTTGGCAACTCTGTCAAATTCACTGAACGGGGGCACATAGTTGTTAAGGTTCATCTAGCTGAAAATATAAATGCTACAATGAATGGAAAATCTGAGACATATCTAAATGGAGGGTCGGATGATGTTGTGCATATGGCTGGCGGTTATCAGTCCAAAACTCTCAGTGGATGCGAAGCAGCTGATGAAAGGAACTGTTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTGCTTTGATGCATCAAGTAAAAAGATGACCACCATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGTGTAGAGGATACTGGTATTGGGATTCCCTTTTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCGGACAGCTCAACCTCTCGAAACTATGGTGGGACCGGTATTGGATTAAGCATCAGTAAGTGTTTGGTTGAATTAATGGGTGGTCAAATTAACTTCATAAGCCGACCCCAGGTTGGGAGCACATTTTCCTTCACTGCAGTTTTTGGTACATATAAGAAAAACGCAATCAGTGACGTGAAGAAACATAATGTGGAAGATCTACCCTCTAGTTTTAGAGGACAGAAAGCCATAGTGGTCGATGGAAAACCTGTTAGAGCTGCTGTGACTCGATACCATCTGAAGAGGCTTGGGATAATAGCTAAAGTTGCTAATGACATTAAAAAGGCTGTTGCTTTATGCGGGAAAAACGTTAATCTAACTGAATATGGCAGAATGTTCCAGCCAGATATAATTTTGGTTGAGAAGGACTCGTGGATATCTGGAGAAGATGGAAGCTTCAATGTTTGGCAACTAGACTGGAAACAGAACGGACATACAATTAAGTTGCCCAAATTGATCCTTCTCGCGACCAATATTAGTAATGCCGAGTTTGATAAAGCTAAAGCTGCTGGTTTTGCTGATACTGTGATCATGAAACCTCTGAGAGCTAGTATGATAGGTGCTTGTCTTCAGCAGGTTCTTGGTGTGGGGAAGAAAAGACAGCAAGGAAAAGACATGGTTAACGGTTCCACTTTTCTTCGAGGCCTTCTTTGTGGAAAGAAAATTTTGGTGGTCGATGACAATGTGGTGAACCGGAGGGTTGCCGCAGGTGCATTGAAGAAGTTTGGAGCTGACGTGAAGTGCGTCGAAAGTGGCAAAGCGGCACTTGAAATGCTTCAATTGCCTCATAGTTTTGATGCGTGCTTCATGGACATCCAAATGCCAGAGATGGATGGGTTTGAAGCAACACGGCAAATCCGGCAGATGGAAAGTGTGGCAAATGAGCAGGCAAATGGGGGATCTAATGGAGGAAATGCCTATAAAAGTGAGTGGCATTTGCCAGTATTAGCCATGACAGCTGATGTAATTCATGCGACCTATGACGAGTGCCTGAAATGCGGTATGGATGGATACGTGTCGAAGCCGTTCGAGGAAGAGAATCTGTATAAAGAAGTCGCAAAGTTCTTCAAATCCAAGTCTATCTCAGACTCATGA 2946 0.4355 MQSQPQHHPVALRFHEQTGSKRKYTFIQAKRAWLPKFLLLWIMMMMLFSGSIYNAMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTVRTAFERPLLNGVAYAQRVVDSGRENFESQHGWVIKTMEREPSPIRDEYAPVIFAQETISYLKSLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLSPEPTMKERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTYPLIMYGNQYEGDKSLVHKSKLDFGDPYRKHQMILGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLEFTYIVLSLFHLSGSDVTGCCXDPGRFRQIITNLVGNSVKFTERGHIVVKVHLAENINATMNGKSETYLNGGSDDVVHMAGGYQSKTLSGCEAADERNCWDNFKHLIADEEFCFDASSKKMTTIQVSEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFGTYKKNAISDVKKHNVEDLPSSFRGQKAIVVDGKPVRAAVTRYHLKRLGIIAKVANDIKKAVALCGKNVNLTEYGRMFQPDIILVEKDSWISGEDGSFNVWQLDWKQNGHTIKLPKLILLATNISNAEFDKAKAAGFADTVIMKPLRASMIGACLQQVLGVGKKRQQGKDMVNGSTFLRGLLCGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHSFDACFMDIQMPEMDGFEATRQIRQMESVANEQANGGSNGGNAYKSEWHLPVLAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFKSKSISDS 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0112 981 Gene3D - 415 656 IPR036890 -
Lele56g0112 981 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 337 417 IPR036097 GO:0000155|GO:0007165
Lele56g0112 981 CDD HisKA 351 412 IPR003661 GO:0000155|GO:0007165
Lele56g0112 981 SMART CHASE_2 105 290 IPR006189 -
Lele56g0112 981 Pfam CHASE domain 108 288 IPR006189 -
Lele56g0112 981 ProSiteProfiles Histidine kinase domain profile. 358 654 IPR005467 -
Lele56g0112 981 Pfam Response regulator receiver domain 839 969 IPR001789 GO:0000160
Lele56g0112 981 Coils Coil 401 421 - -
Lele56g0112 981 Gene3D CHASE domain 109 320 IPR042240 -
Lele56g0112 981 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 651 IPR003594 -
Lele56g0112 981 ProSiteProfiles Response regulatory domain profile. 838 973 IPR001789 GO:0000160
Lele56g0112 981 FunFam Histidine kinase 3 832 977 - -
Lele56g0112 981 Gene3D - 833 980 - -
Lele56g0112 981 Gene3D - 673 815 - -
Lele56g0112 981 CDD HATPase_EvgS-ArcB-TorS-like 474 652 - -
Lele56g0112 981 CDD REC_hyHK_CKI1_RcsC-like 839 969 - -
Lele56g0112 981 SUPERFAMILY CheY-like 836 973 IPR011006 -
Lele56g0112 981 ProSiteProfiles CHASE domain profile. 105 316 IPR006189 -
Lele56g0112 981 FunFam Histidine kinase 4 109 320 - -
Lele56g0112 981 SUPERFAMILY CheY-like 673 815 IPR011006 -
Lele56g0112 981 Pfam His Kinase A (phospho-acceptor) domain 351 416 IPR003661 GO:0000155|GO:0007165
Lele56g0112 981 ProSiteProfiles Response regulatory domain profile. 679 811 IPR001789 GO:0000160
Lele56g0112 981 PRINTS Bacterial sensor protein C-terminal signature 638 651 IPR004358 GO:0016310|GO:0016772
Lele56g0112 981 PRINTS Bacterial sensor protein C-terminal signature 597 607 IPR004358 GO:0016310|GO:0016772
Lele56g0112 981 PRINTS Bacterial sensor protein C-terminal signature 579 593 IPR004358 GO:0016310|GO:0016772
Lele56g0112 981 PRINTS Bacterial sensor protein C-terminal signature 614 632 IPR004358 GO:0016310|GO:0016772
Lele56g0112 981 SMART HisKA_10 351 416 IPR003661 GO:0000155|GO:0007165
Lele56g0112 981 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 405 649 IPR036890 -
Lele56g0112 981 Gene3D - 56 108 - -
Lele56g0112 981 FunFam Histidine kinase 4 323 414 - -
Lele56g0112 981 Gene3D - 327 414 - -
Lele56g0112 981 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 968 - -
Lele56g0112 981 SMART REC_2 837 969 IPR001789 GO:0000160
Lele56g0112 981 SMART HKATPase_4 469 654 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0112 Lele-ChrLele56 1121863 1127635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0112 19 981 Histidine Kinase Gene Family AT2G01830 68.342 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele56g0112 HATPase_c 1.6e-30 CL0025