Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0109 ATGGGCAAGAAGAAGAAAAGAGTTTCTTCGAAGGTCTGGTGTTACTATTGTGATCGGGAGTTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCTACAAGAAACTATCCACTGCTGGCGGCATGGCCATTCACGTGCTCCAGGTTCATAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACGGATATTGAAATATATGGGATGCAAGGGATTCCACCAGACATCTTGGCCGCCCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAACTCAGCTTGTAGGTGGAGTTGTGCCAGCACCATTAGGCATGGGATATCCTCCTCAGTCAACCTTGGGTACTATGCCACCTGTTTATAATCCTGCAGTACCTGTGCCTCATGCCAGTTGGCCAGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCATCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTGAGGCCACCTCTCCCATCAACCGCATCTTCTACACTTACAACATCTCAAGTTGCTCCTCCTGGATTGCCTCCAACGTCTGCTCCAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTCCTGCCCCATCGCTTTCTAGCAGTGTTCCATCTGCATTGCCTGCAAGTGTCCCTGTCCCTGCTGATGCGTATTCAAGTGCCAACACAAGTTTGACAAATAATTATCAAGCACTAGGGGTTCCAGGAGGGACAGCAAGCAACTCGCATTTTTATGCTTCTGGTCCAAATACTGGCGGTCCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGTAACTCAACCTGCCACTAACGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCTATTGACGCAGCCATAGACAAGAGGATACTTCAAAGCAGGCTAGCAGGTCGAATGGCTTTTTAG 1116 0.474 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCYKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDEEDEAPSKAAKVDIPSTQLVGGVVPAPLGMGYPPQSTLGTMPPVYNPAVPVPHASWPVPPRPQPWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTASSTLTTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFPAPSLSSSVPSALPASVPVPADAYSSANTSLTNNYQALGVPGGTASNSHFYASGPNTGGPSIGPPPVIANKAPVTQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILQSRLAGRMAF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0109 371 MobiDBLite consensus disorder prediction 191 211 - -
Lele56g0109 371 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lele56g0109 371 SMART c2h2final6 12 35 IPR013087 -
Lele56g0109 371 SMART c2h2final6 36 59 IPR013087 -
Lele56g0109 371 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lele56g0109 371 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lele56g0109 371 Gene3D Classic Zinc Finger 1 66 - -
Lele56g0109 371 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
Lele56g0109 371 MobiDBLite consensus disorder prediction 191 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0109 Lele-ChrLele56 1103984 1107747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0109 1 351 C2H2 Transcription Factor Family AT1G30970 65.027 1.31e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele56g0109 None None None