Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0106 ATGATTCGAGGGAAAGATCTTCCTAATGGTCTTGACTCTGATGGGGAGAACTCTCGGAGCAAGCTGTCAAAGCCCAATTTTGCCCGTGGCAAGGAGAACCCTGAAGAGAAATTAGGTTATCCCGTAAAGGGGGCGTATTTTCTGAAGGATTCAGAGGAGGGTGGTGATGGAATTCTATTGAAACCCTCTAAAGTTGGGACTGCGGGCTTACAAGAGCTGACCCTCAGCTACCTTTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTGGATAAAGTCACCTGCAAAGGTAAAGAAGTTCTCGTCTCGGAGGATTCAAATCGGGATGAGAAGTGGGTGGAACGGGATTTTCTGAATTTGAACGGAACCAGGGAGAATTATTCAAAGCGATCGGTTGAAGAAGAGGTTGAAAGGGAAAATAAGGACAAGAAGCCGAAGCTGGAGACGCTTAATCTCTCTCTCGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCAAACGCCCTGCAAAACGGTGATCAGCCGGTGAGGCCAAAGCCTAGCAAACCGTCGGCGACTACGTATTCAAATGATTATACAGCGGCTTCTCTATCATACTCGTATTCCCATCCCTTCTCGCACAACCCAAGTTGCTCTCTTACCCTTAATTCTACAGATTTTGATTATTCCGTTAGCAAAGATGATCATATCTGGAACTGCGGAGAGGGGACGAATGGGTCAGTTCATAGTCGGTTCAAGCCGATAGGGGATGGGGTTGCCTTGGCTAATCATGGTGGTGGTGGGTTTAATTCGATCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTCCCATCGGAATTACCTGCCAGGCTCAGATTTGTAGCTCAGTCAGGGAACACGAGAATATTTGAACGTTTAGATAGTGGGAAAGTAAGGAAGCTTTCTAGACCAGAGAAAATTCTAAGAGAGATTGTGTTGGAGTCTGTCTCAACCGTGGCTGCTCAGTTTCAAGAGCTTACTGATGAAGTGGTTGCATCGACCAAGGAATACTTAAAGAATCTCATTGAGATGCCCGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAATCGGCTTGAGCGAAGATCTGACCTTACTAAGGAGACTCTTTCGAAGTGCCAAAAGGGGCAACTTGAGATTTTAGTTGCTATCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCACTTCTCCGAGATGGTAGAGGTTTTCTTGCATTTGAGATGTAGAAATGTGAACTGTAGGAACTTGCTGCCTGTTGATGACTGTGACTGCAAGATTTGTTCTGGAAATAAGGGGTTTTGTAGTTCTTGCATGTGTCCTGTCTGTCTGAACTTTGATTGTGCAAGCAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGCGGCATTAAGAAGAATCTCATCAAACCTGGGCCTAGCTTAAAAGGGCCATCAGGGACCACTGAGATGCAGTTTCATTGCAGTGGATGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAGAGATGTGTTCATATGTTGTGCAAAGGATTGGGGTCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTGAGGAAGATTTTCAAAGGAAGCGAAGATCGCAAAGGGAAGGAATTGCATGTCAAAACTGATGACATGCTCTTTAAGCTCCAAACTAAAACGGTGTCTCCTTTGGATGCCTGCAATTACATTCTACAATTCTTCAACTATGCGGATAGCATGCCAGACCTTCCTGCTTCTGGTATATCCTCAAAGGATTTGTCAGCTTCTCAAGCTAATCTTAGGAAGGAAGCAACATCTCTTTCACAATCTAATTCTCTAATGTCGAAATATACTTATAACTCGGGCTATTCCAGGTCACAATGTGATGTTCTGTCAAATGATCATCATCAGAAAGATCTCAAAACTTCTATCTTAAGTGAATTGAAAAATGAGAGTGATTTCCAGCTGGGGGCTCTGTTAAGAAAAGGTGGGCTTGATAACTTGGAGAGCATTGTGAGGATTAAGGAAGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCCCGGAGAGAAGCGGAAGGGTTCCAAAGGATGATAAGGATGAAAACAGCGCAGATGGAAGAAGAGTATGCCGAAAGGCTTGCCAAGCTCTCTCTTCAAGAGACCGAGGAAACAAGGAGGAAGAAATTGGAGGAATTGAAGGTGTTAGAAAATTCCCGTTGTGATTACTTTAAAATGAAAATGAGAATGCAAGCTGAGATTGCTGGTTTGTTGGAGAGAATGGAGGAAACAAAGCAGCAACGGGTTTAA 2364 0.4429 MIRGKDLPNGLDSDGENSRSKLSKPNFARGKENPEEKLGYPVKGAYFLKDSEEGGDGILLKPSKVGTAGLQELTLSYLCDKEIPGKSLLSSLDKVTCKGKEVLVSEDSNRDEKWVERDFLNLNGTRENYSKRSVEEEVERENKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRPKPSKPSATTYSNDYTAASLSYSYSHPFSHNPSCSLTLNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALANHGGGGFNSIMQGNNSQYKTTSSDNHSFFPSELPARLRFVAQSGNTRIFERLDSGKVRKLSRPEKILREIVLESVSTVAAQFQELTDEVVASTKEYLKNLIEMPEKKEELVSLQNRLERRSDLTKETLSKCQKGQLEILVAIKMGLASFLSGKVHFSEMVEVFLHLRCRNVNCRNLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKKNLIKPGPSLKGPSGTTEMQFHCSGCGHASEMFGFVRDVFICCAKDWGLETLVKELDCVRKIFKGSEDRKGKELHVKTDDMLFKLQTKTVSPLDACNYILQFFNYADSMPDLPASGISSKDLSASQANLRKEATSLSQSNSLMSKYTYNSGYSRSQCDVLSNDHHQKDLKTSILSELKNESDFQLGALLRKGGLDNLESIVRIKEAEARMFQTKADEARREAEGFQRMIRMKTAQMEEEYAERLAKLSLQETEETRRKKLEELKVLENSRCDYFKMKMRMQAEIAGLLERMEETKQQRV 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0106 787 CDD PHD_OBE1_like 455 514 - -
Lele56g0106 787 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 108 785 IPR004082 -
Lele56g0106 787 MobiDBLite consensus disorder prediction 169 190 - -
Lele56g0106 787 Pfam Coiled-coil region of Oberon 648 776 IPR032535 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 462 482 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 722 744 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 416 437 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 338 360 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 535 554 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 377 392 IPR004082 -
Lele56g0106 787 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 683 703 IPR004082 -
Lele56g0106 787 Coils Coil 737 757 - -
Lele56g0106 787 MobiDBLite consensus disorder prediction 1 37 - -
Lele56g0106 787 Pfam PHD - plant homeodomain finger protein 425 549 IPR032881 -
Lele56g0106 787 Coils Coil 689 709 - -
Lele56g0106 787 Coils Coil 765 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0106 Lele-ChrLele56 1084584 1088050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0106 356 581 PHD Gene Family AT5G57380 22.835 9.58e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1371 53 21882068 21889587 Lele56g0106 56 1084584 1088050 hybridization
Lele54g1347 54 18506917 18510928 Lele56g0106 56 1084584 1088050 hybridization