Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0081 ATGAACAAACTTGCTTCAACCTTACCTGCTCGAGACAATAGTGCTAATTCTTCTGATGCCGCTTCCTCAGAAAATAATGGAGTGACCCTTTCCAGAAGAAAAAGAAGACCCCCAGGCACACCGGATCCAGATGCTGAGGTCGTGTGTTTGTCACCCAAGACTCTGCTGGAATCAGACAGATATGTGTGTGAGATCTGTAATCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGACACAAGGTGCCTTGGAAATTGCTGAAAAGGGATAGTAGCAGCACGCAAGAGGTGAAGAAGAAGGTGTTCGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGAATTAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCCGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGACGCGTGCACTGTTCGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCCAATTTAGTTCCATTAATGCAAGGCTTGCCTGTGACAAAACCACCTGCATTGTTAACCTCGGACTTACAAAACAATAAGCCTCCCTACAACACTTCTTCTCATCGTCATAGACATAATAATCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGATGCTCGACGAAACCGAGGTTGTGATCATGACGAGGATAACAACTACGATACCGATCAAACCCACCTGAAGCTTTCAATAGGGTCGTGCAGCAACAATAATAAGACGAACAAGAATGTTGCGAAAGAAGCAGAAGCAGAAGAAGCACTGAGACCAAGGGAAGTGGGCTGGTTGAAAGAGTGTGCAAATGAAGAGCTCAAGTTGGCGATGGCTGAGAAGGCTTATGCAGAAGAGGCAAGAAGAGAGACAAAGCGTGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCGAAGAGGATAAGGAAGGAAGCACAGGAGGAGCTAGAGAAAGTTGAGGCTTTGAAGAAGCAAGCCATGATGAAGACGAGTTCCACTCTGCTGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTGTTGGGGTTTCATCAGAAGAGACATCTCTTGCTATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATTATAA 1278 0.4546 MNKLASTLPARDNSANSSDAASSENNGVTLSRRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDSSSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSEANLVPLMQGLPVTKPPALLTSDLQNNKPPYNTSSHRHRHNNLEELQLLRCSSSSDARRNRGCDHDEDNNYDTDQTHLKLSIGSCSNNNKTNKNVAKEAEAEEALRPREVGWLKECANEELKLAMAEKAYAEEARRETKREIEMAEIEFGKAKRIRKEAQEELEKVEALKKQAMMKTSSTLLQITCQACKQQFQSSIVGVSSEETSLAMSCMSSPTTEGEGDQL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0081 425 MobiDBLite consensus disorder prediction 1 46 - -
Lele56g0081 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 397 IPR031140 -
Lele56g0081 425 MobiDBLite consensus disorder prediction 1 28 - -
Lele56g0081 425 FunFam protein indeterminate-domain 12-like 40 111 - -
Lele56g0081 425 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele56g0081 425 Gene3D Classic Zinc Finger 39 109 - -
Lele56g0081 425 Coils Coil 315 377 - -
Lele56g0081 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lele56g0081 425 Gene3D Classic Zinc Finger 126 204 - -
Lele56g0081 425 SMART c2h2final6 105 135 IPR013087 -
Lele56g0081 425 SMART c2h2final6 61 83 IPR013087 -
Lele56g0081 425 SMART c2h2final6 141 168 IPR013087 -
Lele56g0081 425 SUPERFAMILY beta-beta-alpha zinc fingers 60 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0081 Lele-ChrLele56 936285 938888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0081 26 421 C2H2 Transcription Factor Family AT2G01940 54.253 5.83e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele56g0081 None None None