Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0076 ATGGATCCGTGTGAAAATGCAGAAGCAGAGCGCGGGCGCAAGTTATTCGAAATGGCGGGTGGAAAATCAACCAGGTCGAACCCATCACAGGCTAGAAAGAGAGTCGATGCCGTCGATTATCGGGCTGATACTGGTCTCGTCCGTGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCTGTTGCCCTAATCAGCATGCACAGTTGCAGCCTTGATGCTAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAGCCTGCTGAGGTGAAGAAGCCAGTGGAGAGGAAGAAGCCCAAGTCAAGTGAGCCTAAGGCAAAGAAGGCCAAGGTGGAGAAGGCGGATAAGGGAAAGAAGGGCAAGGATGCTAACAAGCCCAAGCGTCCTCCTACAGCTTTCTTTGTCTTCTTGGAAGAGTTTAGAAAGTCTTTTAAGGAAGCAAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAGGAGGCAGGTGAGAAGTGGAAGTCCTTATCTGATGATGAGAAGAAGCCTTACTTGGATAGAGCTGCTGAACTAAAGTCAGAATACGAGAAAGTATTGGAAAAATATAATGCTGCGGAAGACGGAGCTGATCAAGAGGGATCTGATAAGGAAGATGCGGCTGAGGAAGTGGGGCAAGAAGAGTCTGAGAAGGATGACGCAACGAAGGAAAATGAAGAGCTCACTGATGGGGAGGTCATGGCATTTGATTTTACCTTGCGCTATCCAACCTTTGATAGAATTTGGCTTTCACCTGTTTTCCCGGAATATGTTCTCTTTGTGGAACGTGTACAATTGATCAAATTATGGGGCTTTTGCCGCATGGTTTTAATTATCAATCGTCTTGAATTTAACTTCATGAATCATTACTCAAGTAATACTCATCTGGATAAGAATAAGTGTGGGCAATTTTATTAA 948 0.4451 MDPCENAEAERGRKLFEMAGGKSTRSNPSQARKRVDAVDYRADTGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEVKKPVERKKPKSSEPKAKKAKVEKADKGKKGKDANKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDDEKKPYLDRAAELKSEYEKVLEKYNAAEDGADQEGSDKEDAAEEVGQEESEKDDATKENEELTDGEVMAFDFTLRYPTFDRIWLSPVFPEYVLFVERVQLIKLWGFCRMVLIINRLEFNFMNHYSSNTHLDKNKCGQFY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0076 315 SMART hmgende2 131 202 IPR009071 -
Lele56g0076 315 Coils Coil 214 241 - -
Lele56g0076 315 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 132 201 IPR009071 -
Lele56g0076 315 MobiDBLite consensus disorder prediction 155 175 - -
Lele56g0076 315 CDD HMGB-UBF_HMG-box 132 198 - -
Lele56g0076 315 MobiDBLite consensus disorder prediction 1 18 - -
Lele56g0076 315 Pfam HMG (high mobility group) box 132 201 IPR009071 -
Lele56g0076 315 SUPERFAMILY HMG-box 123 202 IPR036910 -
Lele56g0076 315 MobiDBLite consensus disorder prediction 203 236 - -
Lele56g0076 315 Coils Coil 183 206 - -
Lele56g0076 315 MobiDBLite consensus disorder prediction 91 136 - -
Lele56g0076 315 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 31 231 - -
Lele56g0076 315 MobiDBLite consensus disorder prediction 91 132 - -
Lele56g0076 315 Gene3D High mobility group box domain 117 201 IPR036910 -
Lele56g0076 315 MobiDBLite consensus disorder prediction 1 36 - -
Lele56g0076 315 MobiDBLite consensus disorder prediction 209 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0076 Lele-ChrLele56 907407 910192 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele56g0076 HMG_box 2.6e-20 CL0114