Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0074 ATGGTAAAGCCCATTTCCCCGCACTTGATGCTTAGGTGGGGACCCAAAGTAAAGGTTTTAGCTGTCTTTGCATTATCACGATTTCACTTAATGAAGGAGCTGGAATGTGGTTCAATCTCCAAATCGATGCTCCACAATTCGCATCATGTTCGTGAATTCATCAACTCAACTTGGAGAGTTTGTTCTCTGGTAGGTGGTTGGGTTTCTGGCTTAATATCACAACCCTATAGAGACGTGGAAAGAAAAGGTTATTCAGATTTCATGGCTCAACTGGACTCTATATATATAAGTTCATCAGATGATGACCTGGAGCTGGAGGAGACAGAAACCTCTAATTATAGGAAAACCCCAGAATGGGCTGCCGGAGGAAGTAATGCCGGCTATGGTGGAGGGTTTAAGCAGGATAGTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCCAGGGCTAATAATCACTCACAAGTCAGGCACATTACTAAACACTGGTCTAGTAACAATATGCCAAATCACCGAGTAGCACAAAGAGACGAATCTTTCAATTTTTCAGAGAACGGAAAAACAAATCAGCATCAGGCAGTCGGTTCACGAAGTGCTAATACTGGTGCTGATTATGGAAAAATGCCATCCCAACAAGCCTCAAGAAGGATCCTTCCTTCATACCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTTCTCTCAAGTCATTTTCACCAGATACTAGGCTGAACAATTTAAAAGATAACATGAGCAGCAGAAGCCAGATTCATGATACTCATGGGAATTGTCATAATGATGCAATTAGGATTCTTCCCCCAACTTTGATGCATGGAAAAAACCTCCCTTTTATGCAGTTACCTAGTTCGAGTGAATCTACGTATCATTCTGGAGCAGGCGGAGAGAGGGCTTCTGAAACTGATGAAAGGCTAATATATCAGGCAGCGCTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTACTTTGCCTGATGGTTTATTGTCTGTATCACTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACGAGAAGTTTGCATTGCTTGGGAGGAATTCTGGCTGATGATCAGGGTCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCAAAATCAAAAACAGATGAGATGTGCAATCGTAAAGCTGAAGCGTTAAATTTGGATGAGGATGATGACAATGATAAGGGAAATGGTACTGTAGAACAATCTAAAAAGAGAGAAAAAGATGATGATATAAAACCTTCTAAATCGGTTAGTTCGTCTTCAACACAGGTGCTTGGTAGGAAAAGAGCAGCTGCTGGTACACTGGTTATCTGCCCTGCTAGTGTTCTGCGACAATGGTGGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGGTTTATCATGGGGGCAATAGGACAAAGGATCCTGTTGAACTTGCTAATTACGATGTTGTTCTCACAACATATTCCATTGTGAGTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGAAAAAATGAGGAAAAATTTGGGTTATCCTCCAGGTTTGCTTTTGGTAAAAAGAGGAAAAAGACTCATAACACAAGTGAAAAGAGTAAAAAGGGTAAAATGGGAATTGAAAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCACAAGTGGGTTGGTTCAGGGTTGTTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCCAGAGCTTGCTGCAGCCTCCGAGCCAAAAGAAGGTGGTGTTTATCCGGTACACCAATTCAAAATACTATAGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTACGCTGAATACAAGTCTTTTTACAATACAATAAAGGTACCAATATCTAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCGGTTCTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTGATTGATGGGGAGCCTATAGTTAATTTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGTTTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATACACGAACTCAATTTCAGGCATATGCTGCTGCTGGTACAGTCAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGCCTCCGTCAAGCTTGTGACCACCCATTTCTTGTTAAAGATCATTGTTCTGATGTTGTTGGGGGAATTTCAGTTGAAATGGCAAAAATGCTTCCAAGGGAGATGCTGATCAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAATGATCCACCTGAAAATCCAGTCGTTACTATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCGGAATTTTTGACGGGTTATGATAATTTCTGCCCGGCAGTTGATTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTAAGAAGTGGTATCTCTGGTGGCCTTGGGGATCCTAGTTCTGCAAGTTATCATCATGTTGATTATTCCGTAGTACAGCAGAGACATTACATTTCATCTAAAATCAAGGCAGTCCTTGAGATTCTGCAGTTATATTGTAAAGTAAAGAATCCAGGTTCTGACGGATTGAGTACTCCAGGATGCAGTGGATATTCATCTTTTGAAACTTCAGATGATGAAGATTTCTATTCAGAAGTTCGTCCTGCAAAATACACAAGAAAATATTCAGAGTGCTCCACTGAAGGACCAATGAAGGCTATTGTTTTTTCCCAGTGGAATAGCATGTTGAACTTGGTTGAACATGCATTGGAAGAGTTCTCTATTCCGTACAGGAGACTTGATGGCACCATGACGCTGGTTGCAAGGGATAAAGCTGTGGAGGATTTTAATACTAATCCCGAGGTAATTGTGATGCTGATGTCATTAAAAGCAGGAAACCTGGGTTTAAACATGGCTGCTGCATGCCATGTGATTCTCTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACACGGCTCACCATAAAAAGTACCATAGAGGATAGAATATTGGCTCTCCAGGTGGATGTTGGGTGTGTTATCCAGGAGCCTGACTTCATCGGTGCTGAGTATTTGACAATTGTCTTTCTGGTTGACCAAGGAAAGAAAAGATATTCAGATTTCATGGCTCAGCTAGAGTGTATATATATTAGTTCATCGGATGATGACTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCTCCTCGTGAAAGCAATGCTGGTTATGGTGGAGGGCTTACACTTGATAGTTCTTCGAGACGGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACTGTCTGAGCACTATACTGAACCTGGGTCCAGCAGTTATATGCTAAATCGCAGAGTCACACATGGAGATGGATCTTTCAATGTTTTGAAGAATGGAAATACAAGTCAGTTTCAGACAGTTAATTCTCAAATTGCGAAATCTTCTGGTGCTGATTATGAGAAAATACCATCTCAACAAGCTTTAAAGAGGATCCTTTCATCATCGCCTCTGCCAGCTTCAACAAAGCCATTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACAGCAACCTGGGCACTTTGCATGATAACTATGGCAGGGGCAATGATGAACGTGCGATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCATCTATGATTCATGGAAAGTCTATCTCTAACACACAGTTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGGCAGGGGAAGAAAGAGCCTCGGAAAACGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTAGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGGCTTGGAAAGACAATTTCGATGATTGCTCTCATACAAATGCAGAGGCAATTGCAGTCAAAGTCGAAAGCAGATGAGATGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGAAGATGATGAAAATGATAATGCTGGTGGTACCGCGGAAAAATCTAAAAAGAATGAAGAAGATGGTATAAATCCTATTCCTGAATCAGTTAGTTCATCTTCAACAAAGGTGGTTGGCAGGAAAAGACCAGCTGCGGGTACACTGGTTGTTTGCCCTGCTAGTGTTCTCCGACAGTGGGCGAGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTATCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACATATTCTATTGTGACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGACGATGAAATTGATGAAAAAATGGGGGAAAAATTTGGATTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAGTAAAAAGAGTAAAAAGGGTAAAAAGGGAATTGACGGTTCTTTTGATTGTGCATCTGGTCCCCTTGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAACGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGACCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCAGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACATTGATTGATGGACAGCCTATAATCACTCTGCCCCCTAAGACTGTTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCATACGCTGCTGCTGGTACGGATACACCAGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAAAATATGTGCCCAGCTACTGAATGTAAAGAACAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACATTAAGAAGTTGCATCTCCGGTGATCCTGGTGATAATAGTTCTTCAGGTTCACGCCTTGTCCATTATTCGGTTGTGCAGCAGAGCAATTACAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTTCATTGCTCTGGTCGTTCTAGAAATTCACTGCCTTCTGAAACTTCAGATATTGAAAACTTAGATTCAGATTTGATTTTTACAAGGCACACGAGAAAATATTCAGAGAGCACAACCGATGGACCATTAAAGGCTATCATTTTTTCCCAGTGGACTAGCATGTTGAACTTAGTGGAAGATTCGCTGAAGGACTCTGGCCTTCGATACAGGAGACTTGATGGTACCATGACGCTGGTTGCTAGGGATAAGTCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCCTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTTCTGCTTGTCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACTGAAGACCAAGCTGTTGATCGAGCTCACAGGATCGGACAGACGCGTCCTGTTACTGTGACACGACTAACTATAAGAGATACAGTTGAAGATAGAATCTTGGCTCTCCAGGAAGACAAGAGAAAAATGGTCGCATCTGCTTTCGGCGAAGATCAAGCTGGTGGGACGGCAACTCGCCTAACAGTGGATGACCTAAAATATCTGTTCATGGTCTGA 6060 0.4134 MVKPISPHLMLRWGPKVKVLAVFALSRFHLMKELECGSISKSMLHNSHHVREFINSTWRVCSLVGGWVSGLISQPYRDVERKGYSDFMAQLDSIYISSSDDDLELEETETSNYRKTPEWAAGGSNAGYGGGFKQDSSSKWENTSNASSSRANNHSQVRHITKHWSSNNMPNHRVAQRDESFNFSENGKTNQHQAVGSRSANTGADYGKMPSQQASRRILPSYLQPSTEKPLPSSLKSFSPDTRLNNLKDNMSSRSQIHDTHGNCHNDAIRILPPTLMHGKNLPFMQLPSSSESTYHSGAGGERASETDERLIYQAALEDLNQPKVEATLPDGLLSVSLMRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKTDEMCNRKAEALNLDEDDDNDKGNGTVEQSKKREKDDDIKPSKSVSSSSTQVLGRKRAAAGTLVICPASVLRQWWRELEDKVGDEAKLSVLVYHGGNRTKDPVELANYDVVLTTYSIVSTEVPKQPLVEEDEIDGKNEEKFGLSSRFAFGKKRKKTHNTSEKSKKGKMGIESSFDCASGPLAQVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLNKVVFSIEERAFYTKLEADTRTQFQAYAAAGTVNQNYANILLMLLRLRQACDHPFLVKDHCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCNDPPENPVVTMCGHVFCYQCVSEFLTGYDNFCPAVDCNEKIGDDVVFSKSTLRSGISGGLGDPSSASYHHVDYSVVQQRHYISSKIKAVLEILQLYCKVKNPGSDGLSTPGCSGYSSFETSDDEDFYSEVRPAKYTRKYSECSTEGPMKAIVFSQWNSMLNLVEHALEEFSIPYRRLDGTMTLVARDKAVEDFNTNPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKSTIEDRILALQVDVGCVIQEPDFIGAEYLTIVFLVDQGKKRYSDFMAQLECIYISSSDDDLELEEIENPNYGNRSGWPPRESNAGYGGGLTLDSSSRRANTSNASSSGAYNHSLSEHYTEPGSSSYMLNRRVTHGDGSFNVLKNGNTSQFQTVNSQIAKSSGADYEKIPSQQALKRILSSSPLPASTKPFPSSLQSFAPGSSMNSNLGTLHDNYGRGNDERAMYQNGGIRILPPSMIHGKSISNTQLASSSEAVYRSGAGEERASENDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMCNHKAEALNLDEDDENDNAGGTAEKSKKNEEDGINPIPESVSSSSTKVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEDDEIDEKMGEKFGLSSEFAFGKKRKKAYNASKKSKKGKKGIDGSFDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIITLPPKTVQLNKVDFSIEERAFYTKLEADSRNQFKAYAAAGTDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPATECKEQIGDDVVFSKATLRSCISGDPGDNSSSGSRLVHYSVVQQSNYSSSKIKALLEILELHCSGRSRNSLPSETSDIENLDSDLIFTRHTRKYSESTTDGPLKAIIFSQWTSMLNLVEDSLKDSGLRYRRLDGTMTLVARDKSVKDFNTDPEVTVLLMSLKAGNLGLNLVSACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 2019
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0074 2019 MobiDBLite consensus disorder prediction 402 433 - -
Lele56g0074 2019 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 433 522 - -
Lele56g0074 2019 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1557 1688 - -
Lele56g0074 2019 Pfam SNF2-related domain 1351 1721 IPR000330 GO:0005524|GO:0140658
Lele56g0074 2019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 865 IPR013083 -
Lele56g0074 2019 SMART ring_2 786 824 IPR001841 -
Lele56g0074 2019 SMART ring_2 1725 1763 IPR001841 -
Lele56g0074 2019 Pfam SNF2-related domain 341 747 IPR000330 GO:0005524|GO:0140658
Lele56g0074 2019 ProSitePatterns Zinc finger RING-type signature. 1740 1749 IPR017907 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1228 1258 - -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 106 158 - -
Lele56g0074 2019 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 923 1070 IPR001650 -
Lele56g0074 2019 SUPERFAMILY RING/U-box 1731 1769 - -
Lele56g0074 2019 Pfam Helicase conserved C-terminal domain 933 1033 IPR001650 -
Lele56g0074 2019 Pfam Helicase conserved C-terminal domain 1866 1961 IPR001650 -
Lele56g0074 2019 Gene3D - 1313 1406 IPR038718 -
Lele56g0074 2019 Gene3D - 307 401 IPR038718 -
Lele56g0074 2019 ProSiteProfiles Zinc finger RING-type profile. 786 822 IPR001841 -
Lele56g0074 2019 SMART ultradead3 334 649 IPR014001 -
Lele56g0074 2019 SMART ultradead3 1340 1655 IPR014001 -
Lele56g0074 2019 CDD DEXDc_SHPRH-like 338 670 - -
Lele56g0074 2019 Gene3D - 685 1074 IPR027417 -
Lele56g0074 2019 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1359 1638 IPR014001 -
Lele56g0074 2019 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 353 632 IPR014001 -
Lele56g0074 2019 SMART helicmild6 1878 1961 IPR001650 -
Lele56g0074 2019 SMART helicmild6 950 1033 IPR001650 -
Lele56g0074 2019 Pfam Zinc finger, C3HC4 type (RING finger) 785 830 - -
Lele56g0074 2019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 1058 IPR027417 -
Lele56g0074 2019 CDD SF2_C_SNF 934 1043 - -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1228 1260 - -
Lele56g0074 2019 SUPERFAMILY RING/U-box 782 830 - -
Lele56g0074 2019 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1439 1528 - -
Lele56g0074 2019 ProSitePatterns Zinc finger RING-type signature. 801 810 IPR017907 -
Lele56g0074 2019 Gene3D - 1796 2014 IPR027417 -
Lele56g0074 2019 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1842 2014 IPR001650 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1115 1168 - -
Lele56g0074 2019 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 141 1057 - -
Lele56g0074 2019 CDD SF2_C_SNF 1811 1971 - -
Lele56g0074 2019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1582 2001 IPR027417 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 183 248 - -
Lele56g0074 2019 Gene3D - 1442 1531 IPR038718 -
Lele56g0074 2019 Gene3D - 433 525 IPR038718 -
Lele56g0074 2019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1733 1777 IPR013083 -
Lele56g0074 2019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 670 IPR027417 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 402 442 - -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 130 158 - -
Lele56g0074 2019 Gene3D - 1554 1687 IPR038718 -
Lele56g0074 2019 Gene3D - 526 681 IPR038718 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1408 1450 - -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1420 1435 - -
Lele56g0074 2019 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 550 682 - -
Lele56g0074 2019 Pfam Zinc finger, C3HC4 type (RING finger) 1730 1761 IPR018957 GO:0046872
Lele56g0074 2019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1328 1676 IPR027417 -
Lele56g0074 2019 MobiDBLite consensus disorder prediction 1134 1168 - -
Lele56g0074 2019 CDD DEXDc_SHPRH-like 1344 1676 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele56g0074 Lele-ChrLele56 886165 900248 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0074 91 991 RAD5 or RAD16-like Gene Family AT1G50410 54.248 0.0 881
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele56g0074 SNF2_N 3.5e-68 CL0023