Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele56g0054 | ATGGCCGAGTCACCCTCTCCGACGCCTGAGCAACCCTCGCCGGAATCCGATGATTCCCAGTATTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAAACGCATCCTGAGGGCCCTGACATTCTCTGCCGCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCTTCGCCGTCTTTGGCTCCCCCCTCTACGACTTCTGATCTGATCGACGATCCTCGTTTTGAATCGCAATTTCTGCGCGTACTACGGCTACTTGCAGAGTCGGCGCGTGATGAAGACGGGCCTCCTTCTCCGTCTCGAAACCGCTCTTCAGGCGATGATTTTCTCAGGGTTGACCTCGAGGATTGGGGTGACGATGAAGAAAGCAGCAACAACAATAACAACGATGATGACGACGAAGATGATGGGGTGGAGTTTAACGATGAAGGAGAAGAGCACGAAGGTGCTGAAGAGCATGAAGATGGACTAGGAATAGAGGACTTAAGTGGGGACGAAGCCGACGAAAATCTGAGAAGGAGGAGTATGAGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCAACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTGAGGCTTCAAGTGCCTGATTCGGATCGATTTTTCGGGAATCCTGGAGATTACGTCGATGCTGCTGATTATGAAGCTCTGCTGGTGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGCTCCACCGGCGGCAAAATCAGCGGTGGAGTCGCTGCCGACGGTGGAGATTGTGTCAGAGGATCAAGCCTTGGTGTGCGCTATATGCAAAGATATGGTGGGTGTTGGAAGCATGGCAAAGCGATTGCCCTGTGGACATCAGTACCATGGGGATTGCATAGTACCTTGGTTGGGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGATTATGAGGAGGAAAAGAAGAAGAAGGTGATTGCCACTACTGCTAATGGGGCATCGGGTTCTGGTGGAACCGATGCGGTATCGGGTTTATTTTAA | 1092 | 0.5229 | MAESPSPTPEQPSPESDDSQYWCYHCDKRVSVETHPEGPDILCRECKHGFVESIPSPSLAPPSTTSDLIDDPRFESQFLRVLRLLAESARDEDGPPSPSRNRSSGDDFLRVDLEDWGDDEESSNNNNNDDDDEDDGVEFNDEGEEHEGAEEHEDGLGIEDLSGDEADENLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLVTLAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMVGVGSMAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKKVIATTANGASGSGGTDAVSGLF | 363 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele56g0054 | 363 | Pfam | zinc-ribbon | 20 | 54 | IPR039525 | GO:0061630 | |
| Lele56g0054 | 363 | SMART | ring_2 | 283 | 323 | IPR001841 | - | |
| Lele56g0054 | 363 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 330 | IPR013083 | - | |
| Lele56g0054 | 363 | MobiDBLite | consensus disorder prediction | 57 | 71 | - | - | |
| Lele56g0054 | 363 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lele56g0054 | 363 | FunFam | E3 ubiquitin-protein ligase RING1-like | 246 | 330 | - | - | |
| Lele56g0054 | 363 | SUPERFAMILY | RING/U-box | 278 | 330 | - | - | |
| Lele56g0054 | 363 | Pfam | Ring finger domain | 283 | 324 | IPR001841 | - | |
| Lele56g0054 | 363 | ProSiteProfiles | Zinc finger RING-type profile. | 283 | 324 | IPR001841 | - | |
| Lele56g0054 | 363 | MobiDBLite | consensus disorder prediction | 52 | 72 | - | - | |
| Lele56g0054 | 363 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 104 | 328 | - | - | |
| Lele56g0054 | 363 | MobiDBLite | consensus disorder prediction | 87 | 172 | - | - | |
| Lele56g0054 | 363 | MobiDBLite | consensus disorder prediction | 112 | 149 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele56g0054 | Lele-ChrLele56 | 801869 | 802960 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele56g0054 | 194 | 358 | C3H Transcription Factor Family | AT5G01980 | 45.930 | 4.74e-37 | 137 |