Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele56g0046 | ATGTCTTCCTCCGGTGGAATCGATCATGACGGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCAGAGTCAATATTCCCGCATGCGATTATTCCGACCCTTTCTGTCCATTCTGCTTGCAAGGCTTTCTTGAAGAAATCGAAAACCCTAACCCTTTTGCAGACACAGAGCCCTCTTTTGGCTTTGATCCTCTATCCTTCCTTCCCCTTCTCTTGTCCACTGCTTCTCGCTCCAGGATTCGACCAGATTCCGTTGATGCTGACATATTCGACCCTGTTCATTTCCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGTGCGAACGTCCAGTTCGAGATCAATCATCCTCATGAACAAGCGTTTCGGCTACCCACAAACATTGGAGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAGCTCGCGGAGAACGACCCAAACCGTTATGGCTCCCCACCTGCCTCCCAAACTGCTGTACAGAATCTTCCAACTGTTACTGTCACTGATGAATTGTTGAACTCGGAAATGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGACGAGTGCCTGCTTCCTTGGCTAGAACTGCACAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACCGATGACCCCGATCATGAGAACCCAGCCCACAGGGCCCAGGGGAATGCTAATGCGGGGAGGAGATCTATTGGCAGTGCCAGCAGCAGCGGAGGGGGTAACAGACCGGTTCAGAGGACTTTTAGGATATCATTGCGGTATCCATTTGGCTCACGTGAGTCTACTCAGGAGAATAGCGAACGAGGGTGGGGAAATATGCAAGAAGATTTGGATTGA | 900 | 0.4989 | MSSSGGIDHDGGTKPFFCYKCDRRVNIPACDYSDPFCPFCLQGFLEEIENPNPFADTEPSFGFDPLSFLPLLLSTASRSRIRPDSVDADIFDPVHFLQNHLRDLQADGANVQFEINHPHEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGSPPASQTAVQNLPTVTVTDELLNSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDECLLPWLELHNSCPVCRYELPTDDPDHENPAHRAQGNANAGRRSIGSASSSGGGNRPVQRTFRISLRYPFGSRESTQENSERGWGNMQEDLD | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele56g0046 | 299 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 230 | IPR013083 | - | |
| Lele56g0046 | 299 | SUPERFAMILY | RING/U-box | 162 | 232 | - | - | |
| Lele56g0046 | 299 | FunFam | E3 ubiquitin-protein ligase RING1-like | 144 | 230 | - | - | |
| Lele56g0046 | 299 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 95 | 228 | - | - | |
| Lele56g0046 | 299 | Pfam | zinc-ribbon | 16 | 48 | IPR039525 | GO:0061630 | |
| Lele56g0046 | 299 | SMART | ring_2 | 183 | 223 | IPR001841 | - | |
| Lele56g0046 | 299 | MobiDBLite | consensus disorder prediction | 247 | 265 | - | - | |
| Lele56g0046 | 299 | MobiDBLite | consensus disorder prediction | 233 | 299 | - | - | |
| Lele56g0046 | 299 | ProSiteProfiles | Zinc finger RING-type profile. | 183 | 224 | IPR001841 | - | |
| Lele56g0046 | 299 | MobiDBLite | consensus disorder prediction | 277 | 291 | - | - | |
| Lele56g0046 | 299 | CDD | RING-H2_RNF126_like | 182 | 224 | - | - | |
| Lele56g0046 | 299 | Pfam | Ring finger domain | 181 | 224 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele56g0046 | Lele-ChrLele56 | 748097 | 748996 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele56g0046 | 127 | 235 | C3H Transcription Factor Family | AT5G01980 | 47.706 | 3.64e-32 | 122 |