Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0044 ATGGAGAATCACGCCGCCAACAACCCCAAGGCAGTTTCAGGAGGAGCCAAACCCATCAATGACAACGAAGAGCGTTCCAATTTGAATGAACAGGAGCACACAGAACAAGTGGATGTAGATGAGAATGGAGGTGGGGATGAAGAAGAAGGAGAAAGAACTGGATCTGGCTCCATCCATTCTCCTCATCGCCCCCCTTCCAGAACCCCTTTCACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTTCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAAGCTGGCAGCTATTTGCATGATGATGGGGATGATTTTGAAGATCTACATGATGGTACAGATGATGATGAAGACAATGGCCTTGATGATGAAGAAGAAGAAGAAGAAGAAGATGCATTTGATGCCCTCGCTCATGGTAGTTCTGGTGAAATTGATAGTACCAGCATTGAATTTGACCCTGATGTATTCTCAAGTGATGAAGCCTATGCAAGAGCATTGCAAGAGGCTGAAGAGAGGGAAATGGCGGCTAGGCTATTCGCTATGGCTGGGATAAACGATCGGGAAGCTGAGGACACAGAAGACCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGTAAATTTTCAGGCTTGCACTGCATTTTTGTATGAAGAACTCCTGGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTACTGATAGTATTGCCTCTTTGCCTTTAGTCAACTACAAGATGGGAAGTGATCAGCATGGAAGTAATGATTCGTGTGTCATTTGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTTCATGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTGCTGAGGTTTCAGCTTCTGGGAGCAACTTGTAG 1005 0.4557 MENHAANNPKAVSGGAKPINDNEERSNLNEQEHTEQVDVDENGGGDEEEGERTGSGSIHSPHRPPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFEDLHDGTDDDEDNGLDDEEEEEEEDAFDALAHGSSGEIDSTSIEFDPDVFSSDEAYARALQEAEEREMAARLFAMAGINDREAEDTEDHGANSQDAWEDVDPDELSYEVNFQACTAFLYEELLALGEVVGTESRGLSTDSIASLPLVNYKMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSASGSNL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0044 334 CDD RING-H2_PA-TM-RING 283 323 - -
Lele56g0044 334 MobiDBLite consensus disorder prediction 59 75 - -
Lele56g0044 334 MobiDBLite consensus disorder prediction 101 165 - -
Lele56g0044 334 FunFam E3 ubiquitin ligase BIG BROTHER-related 249 330 - -
Lele56g0044 334 Pfam Ring finger domain 281 323 IPR001841 -
Lele56g0044 334 SUPERFAMILY RING/U-box 272 328 - -
Lele56g0044 334 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Lele56g0044 334 MobiDBLite consensus disorder prediction 23 40 - -
Lele56g0044 334 SMART ring_2 283 323 IPR001841 -
Lele56g0044 334 MobiDBLite consensus disorder prediction 1 75 - -
Lele56g0044 334 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 25 332 IPR043312 -
Lele56g0044 334 MobiDBLite consensus disorder prediction 122 148 - -
Lele56g0044 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 330 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0044 Lele-ChrLele56 740180 744165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0044 48 215 C3H Transcription Factor Family AT3G19910 43.590 3.68e-38 134