Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0022 ATGAATTGGACTTTTGACGCTGCTGTTGCTGGAGTCTCGCCATCGGAGTCTGCCATGATTGGAAAGAGAGAGGCTGAAGATGAACCTGAAAAGCAAGTGACTGCAAAGAAGCAGAAGAGTGACTGGGTTGCTGAAAATCAAAAGAAGGAAAGTAGTGCAGATGATTCCTTTCCAGATTCTGGTTTGGATGATGTGAGTGAGCAAGTTGCTTATGAGGTAGCACCTACTGAAGGTAAGAGTGGACCCAGTGCTATAAAGAAGGAAGGCGAATCGAGGTCAGCTACTGGGAGCAGCTCCATTGACAAAGATGATATAAAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGATGCTATTGATTCAAGTAAAGCATTAGGCTTAGATTCTGACAGCAGAACTGATGGGGATATGGACAATGTAATCGCTTCATCGAAGAAGTTGCTAGCTACTTCTGCTGCAGGTGATAATATATCTACTGAGAAGGTTGAGTCTTTCATTGACTCATCCCTGGATAGTGGCTTAGATGAGGATGGTGTCCAGAAAACAGATGTAACATCACCATCAAGAGAAGGATTTGATGAATGCAATGTGAAAGATGTTGAAATGGTTGATGCTACCTCAACAGGAGCAACTAGAGAGGAAGTTCCTAAAACAGTGTTTACTCCAGAAAAACAGAATGCCAGGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGTGGTAGTACATTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCTATTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGACAAGTTTGCATATACCCCTAGTAGCAGTTGTATGAACAGCAACAACTCATTGAAGGGCTTTCACGCATCCTTTGGAGAAGATGAGCCTACAATGTCAGCTACCTCAAAAGAACAAAATGCCACATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGGAAAATTTATTTAATGATTGTGGAGAAATTGTTGATATTCGATTTGCAACAGATCGTGAAGGGAGGTTTAAAGGCTTTGCGCATGTTTTGTTTGCCACAGAAGAAGCAGCACAACTTGCTAAAATACCAGCTGCTCCAAATGAACAAAATGCCACGTCAAAGACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAAAATATAAGGCTTGATCTGGCTGAAGAAAAGATTGTGCATTCTTCCAATAGCAGTGGCGACCCCAGAAGTGTTGAGTCTCAAACAGTATTTGTAAGGGGTTTTGATACATCCTTAAGAGAAGACGAGATAAGGACTAGCCTGAAAGAGCATTTCGGTTCTTGTGGAATAATTTTGAAGATATCAATTGCAAGAGATTATGGTTCCGGTTCTACTAAGGGGTATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCAATAAAGCACTAGAACTTAATGGAACTGAGGTTGGAGGTTATGATGGCGTGGTGGCGATCAGTTTGGGGGATGGCATGGAGGGGGCCAATGGGACCGTGGAAAAGGTTATGGCAGGAGGTGGCATTCCATACAATGAATTAAGCCTTGTAGCAGAAGGCCCGGGTACCGTTGAGGTGAAATGA 1821 0.4152 MNWTFDAAVAGVSPSESAMIGKREAEDEPEKQVTAKKQKSDWVAENQKKESSADDSFPDSGLDDVSEQVAYEVAPTEGKSGPSAIKKEGESRSATGSSSIDKDDIKTESTILPEKLPDAIDSSKALGLDSDSRTDGDMDNVIASSKKLLATSAAGDNISTEKVESFIDSSLDSGLDEDGVQKTDVTSPSREGFDECNVKDVEMVDATSTGATREEVPKTVFTPEKQNARENLFKSCGEIVDVSFGLYRGSTFRGFAHVEFSTEEAAQNLLRRFVRIEIARDKFAYTPSSSCMNSNNSLKGFHASFGEDEPTMSATSKEQNATSKMLFVGNLSYSVERADLENLFNDCGEIVDIRFATDREGRFKGFAHVLFATEEAAQLAKIPAAPNEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATPEAAQNALKLNGNELLRQNIRLDLAEEKIVHSSNSSGDPRSVESQTVFVRGFDTSLREDEIRTSLKEHFGSCGIILKISIARDYGSGSTKGYAWLDFMDVDGFNKALELNGTEVGGYDGVVAISLGDGMEGANGTVEKVMAGGGIPYNELSLVAEGPGTVEVK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0022 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 281 IPR000504 GO:0003723
Lele56g0022 606 MobiDBLite consensus disorder prediction 20 56 - -
Lele56g0022 606 Gene3D - 218 292 IPR012677 -
Lele56g0022 606 MobiDBLite consensus disorder prediction 97 111 - -
Lele56g0022 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 394 470 IPR000504 GO:0003723
Lele56g0022 606 Gene3D - 382 475 IPR012677 -
Lele56g0022 606 Gene3D - 476 571 IPR012677 -
Lele56g0022 606 CDD RRM1_NUCLs 395 471 IPR034349 -
Lele56g0022 606 SUPERFAMILY RNA-binding domain, RBD 482 570 IPR035979 GO:0003676
Lele56g0022 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 488 571 IPR000504 GO:0003723
Lele56g0022 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 396 463 IPR000504 GO:0003723
Lele56g0022 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 560 IPR000504 GO:0003723
Lele56g0022 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 381 IPR000504 GO:0003723
Lele56g0022 606 Gene3D - 293 381 IPR012677 -
Lele56g0022 606 SMART rrm1_1 489 565 IPR000504 GO:0003723
Lele56g0022 606 SMART rrm1_1 325 394 IPR000504 GO:0003723
Lele56g0022 606 SMART rrm1_1 395 466 IPR000504 GO:0003723
Lele56g0022 606 SUPERFAMILY RNA-binding domain, RBD 231 289 IPR035979 GO:0003676
Lele56g0022 606 SUPERFAMILY RNA-binding domain, RBD 317 381 IPR035979 GO:0003676
Lele56g0022 606 SUPERFAMILY RNA-binding domain, RBD 386 475 IPR035979 GO:0003676
Lele56g0022 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 410 IPR000504 GO:0003723
Lele56g0022 606 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 311 380 - -
Lele56g0022 606 MobiDBLite consensus disorder prediction 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0022 Lele-ChrLele56 609041 616134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0022 326 557 Eukaryotic Initiation Factors Gene Family AT1G49760 25.660 7.00e-15 76.3