Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0021 ATGGCATCATTTCCGTCAAACCTTGCATCCTCCCCGGCAAGCCCCGACTGGATGAACAAAGCAGACAATGCATGGCAGCTCACTGCAGCAACACTGGTCGGGATTCAGAGCGTGCCTGGCCTCATAATCTTATACGGAGGAGCAGTGAAGAAGAAATGGGCAGTGAACTCAGCCTTCATGTCGCTCTATGCTTTTGCCTGTGTTTTCGTGTGTTGGATGACGTGGGGTTACAGATTGTCGTTTGGGGATAAGCTTGCTCCATTCTGGGGAAAGCCTGCTGTCTCCTTGGACGAGGGTTACCTGTTCAAGCCTGCTTTTCTTGGCCTGTTCCCAAACGCCACGATGATGTATTTCCAGGGCGTATTTGCCTGCATCACATTGATTTTGATCGCTGGGGCCGTGTTGGGTCGCATGAACTTCTACGCGTGGATGCTGTTTGTGCCTCTTTGGCTCACATTCTCCTACACATTCACAGCTTTCAGCATCTGGTGTCCTGACGGGTTTCTCTCCAAGATGGGCTTAATAGATTACTCTGGAGGATACGTCATTCATCTCTCTTCTGGGGTCGCTGGATTCACCGCAGCATATTGGGTTGGTCCGAGGCTGAACAAGGACAGAGAAAGGTTCCCTCCAAACAACATACTGCTGATGTTGGCGGGAGCGGGATTGCTGTGGATGGGATGGACGGGCTTCAACGGAGGAGACCCTTACTCGGTGAGCATGGACGCCTCCTTGGCCGTGTTGAACACACATGCATGCACCGCCACCAGCTTGCTCACCTGGGTCGTCCTCGACGTCATCTTCTTCCGTAAGCCCTCTGTGATCGGCGCAGTTCAGGGCATGATCACTGGCTTGGTCTGCATCACTCCTGCTGCAGGTGTTGTGCAGGGATGGGCCGCCATATTCATGGGGTTGTGCTCTGGCTCCATTCCTTGGGTGACAATGATGGTCGTCCACAAGAGATCCAAGTTGCTTCAGAAGGTTGACGACACCATGGCTGTGTTTCACACTCACGCCGTCGCCGGATCTCTGGGAGGGATCCTCTCCGGTCTTTTCGCCGAGCCCAAGCTCAACTTTCTGTTCTATGGCGCCTACAACAAATATGTGGGCCTCTTCTACAGTCTCCAAATGAAAGACGCCAGAACTGGGTTGAGACAGATCGGGGTCCAATTCCTGGGGATATTGTTTGTGACGCTGCTGAATGTGATTGTCACCAGTTTGATATGTCTGTTTATTCGACTGTTGATGCCTTTAAGGATGCCTGAAGATGATATGGAGATAGGGGACGAGGCTGCTCACGGGGAAGAAGCATATGCTATATGGGGACAAGGTGATAAGCTTGACACGTCGGTTTCCAAATATGGGAGTTCCTTGTATGACGATCTTGAGGCTGCAGAGGCGAGGAAGCGTGCGGGACAAGTACTTTCAGAATAA 1434 0.5202 MASFPSNLASSPASPDWMNKADNAWQLTAATLVGIQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFVCWMTWGYRLSFGDKLAPFWGKPAVSLDEGYLFKPAFLGLFPNATMMYFQGVFACITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWCPDGFLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVSMDASLAVLNTHACTATSLLTWVVLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIFMGLCSGSIPWVTMMVVHKRSKLLQKVDDTMAVFHTHAVAGSLGGILSGLFAEPKLNFLFYGAYNKYVGLFYSLQMKDARTGLRQIGVQFLGILFVTLLNVIVTSLICLFIRLLMPLRMPEDDMEIGDEAAHGEEAYAIWGQGDKLDTSVSKYGSSLYDDLEAAEARKRAGQVLSE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0021 477 PRINTS Rhesus blood group protein signature 215 233 IPR002229 GO:0005886
Lele56g0021 477 PRINTS Rhesus blood group protein signature 246 268 IPR002229 GO:0005886
Lele56g0021 477 PRINTS Rhesus blood group protein signature 119 135 IPR002229 GO:0005886
Lele56g0021 477 PANTHER AMMONIUM TRANSPORTER MEP2 6 449 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele56g0021 477 FunFam Ammonium transporter 6 441 - -
Lele56g0021 477 Gene3D Ammonium transporter AmtB like domains 6 442 IPR029020 -
Lele56g0021 477 SUPERFAMILY Ammonium transporter 17 420 - -
Lele56g0021 477 Pfam Ammonium Transporter Family 24 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele56g0021 477 ProSitePatterns Ammonium transporters signature. 176 201 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele56g0021 477 TIGRFAM amt: ammonium transporter 22 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0021 Lele-ChrLele56 605276 606778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0021 113 466 Inorganic Solute Cotransporters AT2G38290 60.734 7.17e-141 407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1443 53 22286164 22287703 Lele56g0021 56 605276 606778 hybridization
Lele54g1434 54 18979161 18981524 Lele56g0021 56 605276 606778 hybridization