Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1488 ATGGGGCGCGTGATTCGCGCCCAGCGTAAGGGTGCCGGTTCCGTCTTCAAGTCTCACACTCACCACCGCAAGGGCCCTGCTAGGTTCCGAAGCCTCGACTTCGGTGAGCGAAATGGTTATCTGAAAGGTGTAGTCACCGATGTCATCCACGATCCTGGTCGTGGTGCTCCTCTAGCCAAGGTCACTTTTCGCCACCCTTTCAGGTACAAGAAGCAGAGCGAGCTCTTCGTTGCCGCCGAAGGTATGTACACTGGCCAGTTCGTTTACTGCGGCAAGAAGGCCACCCTTGTTGTCGGCAACGTCTTGCCCATCAGATCCATTCCTGAAGGAGCTGTTATATGCAACGTCGAGCACCATGTAGGTGACCGTGGTGTGTTCGCTAGGTGTTCTGGTGATTATGCTATTGTTGTTAGCCATAACCCCGATAACGATACATCTAGGATCAAGCTTCCATCCGGCGCAAAGAAGATTGTTCCCAGTGGTTGTCGTGCCATGATTGGGCAGGTTGCAGGTGGAGGCAGAACTGAGAAGCCCCTTCTGAAAGCTGGTAATTCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCTAAGGTACGTGGTGTGGCTATGAACCCAGTTGAGCATCCCCATGGAGGAGGTAACCACCAGCACATTGGACATGCAAGTACTGTCAGGCGTGATGCACCTCCCGGGCAAAAGGTTGGTCTTATTGCCGCCAAGAGGACTGGTCGTCTTAGGGGACAAGCTGCCGCCACTGCGGCTAAAGCCGATAAGACTGCCTAG 786 0.5369 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQSELFVAAEGMYTGQFVYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVVSHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNSYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKTA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1488 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Lele55g1488 261 Gene3D - 90 169 IPR014722 -
Lele55g1488 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Lele55g1488 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 MobiDBLite consensus disorder prediction 210 230 - -
Lele55g1488 261 FunFam 60S ribosomal protein L2 1 86 - -
Lele55g1488 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Lele55g1488 261 PANTHER RIBOSOMAL PROTEIN L2 2 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele55g1488 261 Gene3D - 1 86 IPR012340 -
Lele55g1488 261 FunFam 60S ribosomal protein L2 170 247 - -
Lele55g1488 261 FunFam 60S ribosomal protein L8 90 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1488 Lele-ChrLele55 21025756 21027346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1488 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 500
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0066 49 413325 414915 Lele55g1488 55 21025756 21027346 CCT
Lele55g1488 55 21025756 21027346 Lele55g1488 55 21025756 21027346 ECH
Lele53g0006 53 75613 77205 Lele55g1488 55 21025756 21027346 hybridization
Lele54g0005 54 88730 90874 Lele55g1488 55 21025756 21027346 hybridization