Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1485 ATGAGTGCTTTCAACGGCGATGAGACTGCTCCCTTCTTCGGCTTCCTTGGAGCCGCGGCGGCCCTTGTTTTCTCCTGTATGGGGGCCGCTTACGGCACTGCAAAGAGTGGTGTTGGAGTTGCCTCTATGGGTGTCATGAGGCCGGAACTTGTTATGAAATCCATAGTGCCCGTTGTAATGGCTGGTGTCTTGGGTATTTATGGTTTGATCATTGCGGTCATCATTAGCACCGGAATTAACCCCAAGGCCAAATCCTATTATCTCTTCGATGGATACGCCCACCTTTCTTCCGGTATTGCTTGCGGTCTTGCTGGTCTATCTGCTGGCATGGCCATTGGTATTGTAGGCGATGCTGGTGTTAGGGCGAATGCTCAACAGCCCAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCATTGGCATTATATGGGGAACCGAACATGGATGTTACCAAGCAAACTAGGGGCGTGAATGCCTAA 489 0.499 MSAFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGIACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGEPNMDVTKQTRGVNA 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1485 162 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 147 - -
Lele55g1485 162 Gene3D - 10 148 IPR035921 -
Lele55g1485 162 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lele55g1485 162 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 147 - -
Lele55g1485 162 Pfam ATP synthase subunit C 96 147 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele55g1485 162 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele55g1485 162 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Lele55g1485 162 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele55g1485 162 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele55g1485 162 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele55g1485 162 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele55g1485 162 FunFam V-type proton ATPase proteolipid subunit 10 154 - -
Lele55g1485 162 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Lele55g1485 162 SUPERFAMILY F1F0 ATP synthase subunit C 86 147 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1485 Lele-ChrLele55 20964075 20965488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1485 1 147 Primary Pumps ATPases(2) AT2G16510 97.959 2.80e-99 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele55g1485 55 20964075 20965488 CCT
Lele50g0114 50 684980 685644 Lele55g1485 55 20964075 20965488 CCT
Lele51g0108 51 622791 623456 Lele55g1485 55 20964075 20965488 CCT
Lele53g0008 53 125818 126925 Lele55g1485 55 20964075 20965488 hybridization
Lele54g0007 54 146282 147612 Lele55g1485 55 20964075 20965488 hybridization