Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1481 ATGAGAACGCTTTGTGACTCTTGTGAGAGCGCCGCCGCCATCGTTTTCTGCGCTGCCGATGAGGCCGCTCTCTGCCGTGCCTGTGACGAGAAGGTTCATTTGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTGGTCTGGCAAGTCCTAGCGATGTGCCTCGCTGTGACATATGTGAAAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGTTCGCTTTGCTTGCAGTGTGACATGATGGTTCATGTTGGGGGTAAAAGAACACATGGACGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAAACTGGTGTTCCAGAAAACTCAGCTTCTCTGTCTCTGGAACCTGGTGAGACTAAAAGAGGACAAAATCTTCTGCCTAAAGTGAAAGTGGGAGAGAGACAACAAAATTATAGGTTAGCTTTGGTTGCAGCACCTGAACATGATGCTGACGGCCATGCGATGATCGAAACTAACATGATTGATTTGAACATGAAGCCTCAGAGAGTACATGAACAAGCTTCCAATAATCAGGTTAGATTGCATAAGAAATTCCCAGCTTGCTTTGAAGGATCATCTCCAGGTCCCTGCATATCAGGACCCATTGTGAAGAACAAAGATCATTTCATTTCCCTGAAGCAGCTTACAGAAGTTCTTACAAGGTCACTATTAATATGTCCTATTTATTGTGGGACTGAAGAATCCATTAGAAATCATTTTGAAAGAGGTTTTGCCCCAGTGAAAAGGAAACTTATAAACTTCGAGATATTGCATCCTTCCAAAACAGAGACTGTAAATTCTTACAAAACATTAAAAAAATCAAATCATTGGTCTGGATGGACCCTGAGTTGTAACAGCTGTGGTTGGTTTGTGGCAGCTGTAAATAATAGAGCATCTAGTCTGTCTTTGTTAGAACTTTAG 936 0.4263 MRTLCDSCESAAAIVFCAADEAALCRACDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKTGVPENSASLSLEPGETKRGQNLLPKVKVGERQQNYRLALVAAPEHDADGHAMIETNMIDLNMKPQRVHEQASNNQVRLHKKFPACFEGSSPGPCISGPIVKNKDHFISLKQLTEVLTRSLLICPIYCGTEESIRNHFERGFAPVKRKLINFEILHPSKTETVNSYKTLKKSNHWSGWTLSCNSCGWFVAAVNNRASSLSLLEL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1481 311 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lele55g1481 311 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lele55g1481 311 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Lele55g1481 311 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lele55g1481 311 CDD Bbox1_BBX-like 56 96 - -
Lele55g1481 311 FunFam B-box zinc finger protein 19 2 92 - -
Lele55g1481 311 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Lele55g1481 311 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lele55g1481 311 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Lele55g1481 311 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele55g1481 311 CDD Bbox1_BBX-like 4 47 - -
Lele55g1481 311 Gene3D Classic Zinc Finger 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1481 Lele-ChrLele55 20916806 20919296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1481 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 1.23e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele55g1481 zf-B_box 4.1e-07 No_clan