Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1456 ATGGCACATCACAGGATGCAATCTGTAAGGTTTGGAGAAGAAATCAAATCTTCTTCTTTGAGAATAAAACATCATAGGATTAAAAATGGCACTCTAAGTGGTAACATAAAGCAGGATCAAACATGGGAAGATAAGCATATAACTGCTTCAATAGGAAGAATCAACGAAATGGTTGCCGAGGCAAGACTTTCTAAGAATCCCCAAGGGCATACTTCATTAACAAGCTCCGCAGGGTCGGTTAAATCTGGTCCTGTTTTCTTTTCAAATCCAACTGACAAGAGGATCCAAAGCACATTATCGTCGTCGATATCATCATCATTCAGTTCTAGTATCGGAATATCCGCACTGTCCAGCTCATCTGCGATGAGCGGGAAGGGCACTGGGAAGAGTCATTCTGAAGGGAAAAAACCAGAAAAGAAGAAGAAGGAGAAGGAGAAGGAGAAAGGAGCATTGTTTGCTTGTATGAGACAAAAGTCATGCAAGAACTCAAGAAAATCGCCGGAACGTGCAAGAGTTGATGAAGCATTGATCATAGAGAGAGAGCGCGTGGTGGAGAGTCTGCCACAATTCTGGGCAGATAAGTACCAACCTGCTTCCCTTAATCCCTTCGTTTGCCACAGAGAAGAAGCTCAACTTCTCAAGGGATTAGAAGGAAGGCCTAGGAAAGTAAGTGTTCCAATAACGTTCAGTCTTCATCACGTGGAACTAAACGTAAATTTAGAACCGAATGCAAAGTATGCTTTGATTGGATTAGTGAAGGAAATGAGCCGTATCTATGCAATAGCACCCCAAGATCCCAATCTTAATATCAAGTCAGATTGTCAAGTGATGGTTCTCTATGAGGTTGACAAGGTAGAACATGATATCCAGCAGATAATCCAATGGGTTATAGACCGCCACTCCAAAACATGCAAATTAATACTCTGCTGCCAAGATGATGTTGACATTCCTGAATCTCTGAGGAACCTGTTCAAAGTCATTGAAGTTCATCCCCCTACTACGCCTCAGATTATGGAGGTTCTATTTGAGATAGCAAAGAAGAAGGATATTCATCTATCAAACAATTTTGCTGCTATGATTGCTGCAAAATCTAATCAGAATCTCAGGCAAGCTATCATGGCTCTTGAGGCATGCAAAGCATTCAAATATCCATTTTTGGAAGAACAACCAATTTCAATTGGATGGGAGGATGTTATAATAGAAATTGCTTCAGAGATCATAGCCGATCCATCAAATGCATGCCAAATATCAGACAAAAGACTCCCACCTGGGACCATAGCTTTAACCAAGTTGGCTGACGAACTGCTTACTCTTGCAGTTGTAAAACGAAGTAATACTCCAAAGCAAATGAAAGATAACGTTGGACTTCGTCAAAAGAAATCAGCAAGCACTAAGAAGGGAGCTGGCAAGTATGAGAAAGTAGGGAAAGAAGCTTCTGGAAGTGATGAGGATCCAATGAAAGAAGAGCTCAAAAGAACCAAAAGGTTGGCGTCCACAAGAGAAATAGGTTCAGGCAGTTTGCAGAGGAATCCGACGACAAAGAAGAGCCATCCGATATTCAGCTTCATGGATTTCGGAGGGAAGAAGAAAACAACGGCGAGGCCTGAGATGGGAAGATATATTGAGTATCTCAAGGAAGGAGGCATGTGGGATTCCGATTCTAATAAGCCTGTCATTTATTACAACATACTAGTTCATAAGAGGGAAGGAGCCAGCCAACTCCAACTGTGGAGGGTGGACTGTGGAGCTCCGGCAATGGAGCTAGTAGCTTCACACTTATCTCCAACTCGTCCCAGAAAGAAATTTCCTTCTCACACTCCATTTCCTGGGCTCATCTCCAGAACTATATGCCATCAAATCCCACTTGAATTTTCATCCCATTTTATTACCTTTATAAATAGGAATGGTCGTTTTGAAGCGTGTGCCCGTAAAAAAGAGAGGGTCAGCGAACTAGAGTATAGCAGAGGAGTCGAAGCAGCAGAGAAACTACACACGACCTCTTCTTTGGACGATGACTCGTCTTTTTTGTCTCTCAGCGAGAAACCTGACAGGAATTTGGTTTTGCTGGATGATTATGAAGCGGAGGAGCTTGATTATGATTCCCACCCTGACCATCGAAGCGGATATGTGGCTTTACTTGGGAAGCCAAATGTTGGGAAGAGTACGCTAGCAAACCAAATGATTGGTCAAAAGTTGTCTATAGTTACACAGAAACCTCAAACAACAAGGCACCGCATTCTTGGTATATGTTCTGGCTCAGATTATCAGATAATACTTTATGATACACCTGGTGTTCTCAAGAAGGAAATGCACATGTTGGACTCCATGATGATGAAGAATGTTCGCAGTGCTGCAGTCAATGCTGATTGTGTATTAATTCTTGTTGATGCGTGTAAAGTTCCTGAAAATATTGATGAAGTGTTGAAGGAAGGTGTAGGAGATCTCAAGGATAAACCCTCCACTCTACTGATTCTTAATAAGAAGGATCTTATCAAACCTGGGGAAATTGCGAAGAAACTTGAGTGGTATCAGAAATATACTGATGTTGATGAGGTTATACCAGTTAGTGCTAAATATGGTCATGGCATTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCGGCATACTATCCAAAGGACATTGTCAGTGAGCACCCAGAAAGATTTTTTGTGGGTGAAATCATTCGAGAAAAGATCTTTATGCAGTACCGAAATGAAATACCCTATGCTTGCCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCCAATGCAAAAGATTTCATACAAGTGGAAATTGTTGTTGAAAAGAATTCACAGAAGGTTATACTTATTGGAAGAGAGGGAAAGGCTTTGAAACTTCTTGCAACAGCTGCCCGTCTGGACATTGAAGACTTTCTGCAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTGAAAGAAAATTGGCGACAAGATGAAGGGCTTCTTAAGAACTATGGATACGGGGGCCAGATACGAGTTCTGTAA 3018 0.4182 MAHHRMQSVRFGEEIKSSSLRIKHHRIKNGTLSGNIKQDQTWEDKHITASIGRINEMVAEARLSKNPQGHTSLTSSAGSVKSGPVFFSNPTDKRIQSTLSSSISSSFSSSIGISALSSSSAMSGKGTGKSHSEGKKPEKKKKEKEKEKGALFACMRQKSCKNSRKSPERARVDEALIIERERVVESLPQFWADKYQPASLNPFVCHREEAQLLKGLEGRPRKVSVPITFSLHHVELNVNLEPNAKYALIGLVKEMSRIYAIAPQDPNLNIKSDCQVMVLYEVDKVEHDIQQIIQWVIDRHSKTCKLILCCQDDVDIPESLRNLFKVIEVHPPTTPQIMEVLFEIAKKKDIHLSNNFAAMIAAKSNQNLRQAIMALEACKAFKYPFLEEQPISIGWEDVIIEIASEIIADPSNACQISDKRLPPGTIALTKLADELLTLAVVKRSNTPKQMKDNVGLRQKKSASTKKGAGKYEKVGKEASGSDEDPMKEELKRTKRLASTREIGSGSLQRNPTTKKSHPIFSFMDFGGKKKTTARPEMGRYIEYLKEGGMWDSDSNKPVIYYNILVHKREGASQLQLWRVDCGAPAMELVASHLSPTRPRKKFPSHTPFPGLISRTICHQIPLEFSSHFITFINRNGRFEACARKKERVSELEYSRGVEAAEKLHTTSSLDDDSSFLSLSEKPDRNLVLLDDYEAEELDYDSHPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTQKPQTTRHRILGICSGSDYQIILYDTPGVLKKEMHMLDSMMMKNVRSAAVNADCVLILVDACKVPENIDEVLKEGVGDLKDKPSTLLILNKKDLIKPGEIAKKLEWYQKYTDVDEVIPVSAKYGHGIEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEIPYACQVNVVSYKARPNAKDFIQVEIVVEKNSQKVILIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKNYGYGGQIRVL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1456 1005 Pfam 50S ribosome-binding GTPase 710 827 IPR006073 GO:0005525
Lele55g1456 1005 MobiDBLite consensus disorder prediction 64 85 - -
Lele55g1456 1005 PANTHER GTPASE ERA 659 990 IPR005662 GO:0003723|GO:0005525
Lele55g1456 1005 TIGRFAM era: GTP-binding protein Era 708 981 IPR005662 GO:0003723|GO:0005525
Lele55g1456 1005 Gene3D - 887 1002 IPR015946 -
Lele55g1456 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 379 IPR027417 -
Lele55g1456 1005 MobiDBLite consensus disorder prediction 449 497 - -
Lele55g1456 1005 FunFam replication factor C subunit 3 333 391 - -
Lele55g1456 1005 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 883 998 IPR009019 GO:0003723
Lele55g1456 1005 FunFam GTPase Era 703 886 - -
Lele55g1456 1005 MobiDBLite consensus disorder prediction 117 147 - -
Lele55g1456 1005 Hamap GTPase Era [era]. 705 998 IPR005662 GO:0003723|GO:0005525
Lele55g1456 1005 TIGRFAM small_GTP: small GTP-binding protein domain 710 869 IPR005225 GO:0005525
Lele55g1456 1005 Pfam KH domain 910 987 IPR004044 GO:0003723
Lele55g1456 1005 MobiDBLite consensus disorder prediction 129 147 - -
Lele55g1456 1005 CDD Era 705 874 IPR030388 GO:0005525
Lele55g1456 1005 ProSiteProfiles Type-2 KH domain profile. 907 984 IPR004044 GO:0003723
Lele55g1456 1005 Gene3D - 216 332 IPR027417 -
Lele55g1456 1005 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 706 876 IPR030388 GO:0005525
Lele55g1456 1005 Gene3D - 335 385 - -
Lele55g1456 1005 MobiDBLite consensus disorder prediction 453 497 - -
Lele55g1456 1005 FunFam GTPase Era 887 1001 - -
Lele55g1456 1005 Gene3D - 702 885 IPR027417 -
Lele55g1456 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 907 IPR027417 -
Lele55g1456 1005 MobiDBLite consensus disorder prediction 65 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1456 Lele-ChrLele55 20728892 20741641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1456 190 436 Core DNA Replication Machinery Family AT5G27740 28.990 2.77e-28 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1456 55 20728892 20741641 Lele55g1456 55 20728892 20741641 ECH