Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1453 ATGGTCTCTGCGATTTGCTTTTTTGTGTCGGAAGGGAAATTGATATGCTGTGCAAACATGTCATTGAAGAGCATTGTTCGTGAACTTAAGGAAATGAGAGATGGAATGAGCAACATGTCGAAGCGAGGTGCAGAATGTAGGCAATGGCATAGTCGAAAAGCAAAATCACACATTGCTCCAGATGTCACTGTACCACCAGTTGATTCCATTCAACAAGGACAGTGGGCAAATCTACCTCCAGAACTGCTTTTGGACATTATTCAGAGGGTGGAAGAGAGTGAGATAACATGGCCTGCACGGGCTGTCATTGTTTCCTGTGCTTCAGTATGTAAATCATGGAGAGACATTACAAAGGAAATTGTCAAGACTCCTGAGCAATGTGGGAGGCTAACATTTCCTGTCTCAGTGAAGCAGCCCGGTCCTCGTGATGCACCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATACCACATGTATTTTGGTCTTGTGCCGTCGGAAAATGAGAGAGCCAAGTTGTTATTAACTGCAAAGAAGGTAAGGAAACCAACGGCCAGAGAGTTTGTTATATCCCTTATTGCAGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTGAATTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATTTGATAGCCAACCTCCACAGAAAGCTAGCATTCAAGCGAATAATCATTCTAGTAGTAAATTCCACTCAAAGCAGGTATCTCCTAGAGTACCAGCACGTAAATATAACGTTGCCACCATCAGTTATGAACTCAATGTTCTTCGCAAGAGAGGTCCAAGAAGAATGCACTGCATTTTGAACTCCATACCCATGGGGGCTATTCAGGAAGGACTCAATGCCCCAACTCCAACAACTCTTCCGCAAATTTCTTCCTCACCAGCAGTGGAAAGAAAAGATTCAACTACAGATTTAAACTCCACAAACTTACTAGATCTACTGGCATCAAGTCAGGGCTCGGTTGATCCACTTGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAACTGCAATGTTGGTGCCTAAATTTCAAGGGTCGCGTGACAGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCGTCTCATGATGTTCCTGCTGCAGAACAAGAGAAGGTGATCTTGCAGTTTGGGAAGATTGGTAAAGACATATTCACCTTGGACTACCGATATCCTCTCTCAGCTTTTCAAGCTTTTGCCATATGCTTGAGCAGTTTCGATACTAAACCGGCTTGTGAATGA 1290 0.4372 MVSAICFFVSEGKLICCANMSLKSIVRELKEMRDGMSNMSKRGAECRQWHSRKAKSHIAPDVTVPPVDSIQQGQWANLPPELLLDIIQRVEESEITWPARAVIVSCASVCKSWRDITKEIVKTPEQCGRLTFPVSVKQPGPRDAPIQCFIRRNRETSTYHMYFGLVPSENERAKLLLTAKKVRKPTAREFVISLIADDFSRASSTYLGELRSNFLGTKFAIFDSQPPQKASIQANNHSSSKFHSKQVSPRVPARKYNVATISYELNVLRKRGPRRMHCILNSIPMGAIQEGLNAPTPTTLPQISSSPAVERKDSTTDLNSTNLLDLLASSQGSVDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHDVPAAEQEKVILQFGKIGKDIFTLDYRYPLSAFQAFAICLSSFDTKPACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1453 429 MobiDBLite consensus disorder prediction 294 314 - -
Lele55g1453 429 Gene3D Tubby Protein; Chain A 132 429 IPR025659 -
Lele55g1453 429 SUPERFAMILY F-box domain 71 118 IPR036047 GO:0005515
Lele55g1453 429 Pfam Tub family 136 424 IPR000007 -
Lele55g1453 429 Gene3D - 68 122 - -
Lele55g1453 429 SUPERFAMILY Tubby C-terminal domain-like 124 429 IPR025659 -
Lele55g1453 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Lele55g1453 429 ProSitePatterns Tub family signature 1. 357 370 IPR018066 -
Lele55g1453 429 PRINTS Tubby superfamily signature 255 282 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 190 206 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 339 356 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 206 230 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 357 373 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Lele55g1453 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Lele55g1453 429 Pfam F-box domain 75 122 IPR001810 GO:0005515
Lele55g1453 429 PANTHER TUBBY-RELATED 41 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1453 Lele-ChrLele55 20714973 20718292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1453 20 429 TUB Transcription Factor Family AT2G18280 60.952 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele55g1453 Tub 1.3e-103 CL0395