Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1451 ATGGGAACTGATCGTGGTGTAGTGGATACAGCACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACTGAGTTATTGAGATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAATTGTGCAGTTGATAAAGCCAAACTTCTTCTTCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCTGTGACGGGAGATACGGTACTCTCAAGATTCCAAAAAGCAAGAAAGTCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCATCGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTGTTGGACTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAGTTACTTCAGCAAGGTTCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCCAAAGGCTATGTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAACTTGGATCAAATGATCAGACAAAAAAGATGATCTTGGGATATCTCTTGTATCTATTGAAGAAGTATGGAAACTTTATCACAGGAGAACAGATGGAAATGGTCTATCCTTATAGTGAAGGATCAATTGTACCTGAAAACAGCGGCCGTCATTCTCGACATATCCATTATGTTGAACTAGAAAGATGCCATAATTATGATCAGTATGAAACTCACAACTGTGAGATGGGTAGAGTAGAACCACCAGAGGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATGCAAAAGTGGTTTGATGAGGGCAATGATACATGTCCAAAAACCAGGAAGAAACTGTCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCTAAGTGGTGCAGAAATAATGGAGTTACACTTGCTGAGCCTCAACATCGAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGAAGTTCTATGAATGATCTGCACTTGCCACTAGATCTTAGCAGCATGTCAATTGGATCATTAGATTATAGTCAATGTTCTGATTCCTCACATGCTAGGATCACTACTGACCTAAATTTGATGTCGAAGAAGGCCAATGACAATTCTTGGAGTGCTCAACTTAATGTGCATTTGCATGACACCGATCTGATAATTCTGTCTAAATTCCATGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAAAGATCGTTCGAAATGCAATTGCCAAGCTTCTTGTTCCGTGTCTTCTGAAAATTTGGTTGAACTTCTTAACAGATTTTTGAGCAGTGCATATGAGCATCAAGATGTAAAAGCTCTGAGAACCGGAACTCAGTTGTTAATGGAATTTGTGAATAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGATACATTTGGCTTGTTGGCAAGTTTCCTTGATTTAGAAGTGATAGGTGAAGCCCTTTCTATAATGGAAAAACTATCTGCAAATCATCACAACAAAGCTGCAATTGCAACATCCAGTGTGCTCACTCCAATCTTAAAGATTTTGGGCTCTGACAGCAGAGAGTTCCAAGAAAAAGCTATCAGAATATTGCATAATTTGTCTTGCAACAGTGAAAATTGCTCCCACATGGCATCTCTCGGGTGCATCCCCAAATTGCTGCCCTTTTTCGAGGACCAGGCCCTTTTAAGATACTGTATATGTACATTGAAAAACCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGTGGGAACTAATGGATGCATATCTACAGTTGCTGAGATACTTGACACTGGCAGTGTTGAGGAACAGGAACATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGTGAAGATTATTGTCAGTTGGTCATGTATGAGGGTGTCATCCCTTCTCTTGTCACTATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATACGAAGAAGAGTCCATGAAACCAAGAATTGACACCCAAGGTTCTAACGATCATTCTCAAGAAAAGAAATCGTCAAAGACCTCTGGATTTCTGAAGAAACTATCACCATTCTCAAAAAGCAAGAGATGA 2253 0.3995 MGTDRGVVDTAPNIRSFKVHRKMCTELLRLVDRISRIFPDIEAARPRCSSGIQSLCLLNCAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGSSTSDSIENSEIKALQFAAARLNITSPKAMLIEKRSIKKLLDKLGSNDQTKKMILGYLLYLLKKYGNFITGEQMEMVYPYSEGSIVPENSGRHSRHIHYVELERCHNYDQYETHNCEMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWMQKWFDEGNDTCPKTRKKLSHMSLTPNTVMKDLISKWCRNNGVTLAEPQHRAKEFHSWEVSSTSIRSFGSSMNDLHLPLDLSSMSIGSLDYSQCSDSSHARITTDLNLMSKKANDNSWSAQLNVHLHDTDLIILSKFHDLEWDSQCQAIKDLKDRSKCNCQASCSVSSENLVELLNRFLSSAYEHQDVKALRTGTQLLMEFVNNCGKDLSYLREDTFGLLASFLDLEVIGEALSIMEKLSANHHNKAAIATSSVLTPILKILGSDSREFQEKAIRILHNLSCNSENCSHMASLGCIPKLLPFFEDQALLRYCICTLKNLCDIEVGRVSVVGTNGCISTVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSALELLRLLGDVQYEEESMKPRIDTQGSNDHSQEKKSSKTSGFLKKLSPFSKSKR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1451 750 FunFam RING-type E3 ubiquitin transferase 271 345 - -
Lele55g1451 750 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Lele55g1451 750 MobiDBLite consensus disorder prediction 714 736 - -
Lele55g1451 750 PANTHER U BOX DOMAIN-CONTAINING 22 712 - -
Lele55g1451 750 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Lele55g1451 750 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Lele55g1451 750 SMART arm_5 666 706 IPR000225 GO:0005515
Lele55g1451 750 SMART arm_5 543 583 IPR000225 GO:0005515
Lele55g1451 750 SMART arm_5 584 622 IPR000225 GO:0005515
Lele55g1451 750 SUPERFAMILY ARM repeat 521 709 IPR016024 -
Lele55g1451 750 CDD RING-Ubox_PUB 276 318 IPR045210 -
Lele55g1451 750 Gene3D - 441 722 IPR011989 -
Lele55g1451 750 MobiDBLite consensus disorder prediction 714 750 - -
Lele55g1451 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 345 IPR013083 -
Lele55g1451 750 SUPERFAMILY RING/U-box 262 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1451 Lele-ChrLele55 20707424 20710931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1451 15 723 U-box Gene Family AT4G36550 37.171 1.82e-136 418
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0169 50 994012 995116 Lele55g1451 55 20707424 20710931 CCT
Lele49g0149 49 897070 899292 Lele55g1451 55 20707424 20710931 CCT
Lele55g1451 55 20707424 20710931 Lele55g1451 55 20707424 20710931 ECH
Lele55g1451 55 20707424 20710931 Lele56g1383 56 16947839 16951443 ECH
Lele53g0047 53 366582 371463 Lele55g1451 55 20707424 20710931 hybridization
Lele54g0046 54 400435 404068 Lele55g1451 55 20707424 20710931 hybridization