Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1448 ATGACAACCGCTCATCAGAATTATGATGATGATCATCACCCCAAAAGGGATTCTTCAGAACACCACCATCATCTTTATTTTCCTCCTCCGTCGTCGAATCAGAGACAAAGTGATCCATATCCCAGCTTAACTACGATTGTTAAGTACGGAGAGTGTTTGAAGAATCACGCAGCGAGCATGGGGAGTCATGTTGTGGATGGATGTGGAGAGTTCATGCCCAGCGGAGAAGAAGACACCATGGAATCTTTAAGATGCGCGGCTTGTGGATGCCACCGGAATTTTCATCGGAAAGAAACAGAAGGTAATAAGCCAGAACTACAACATATTTCTGATAATTATTACAGCTATTATTCCCACAAAAGCAACAATCAACGACATAGAATTGCTTCTCCTTTAGTCCCTTCTCCTCTTCATCAACCACATCACAGATTCATTCCACCAATGATGGTGGCCTTCAGCGGAGGGGTGCCGGTGGAGTCCTCCGCCGAAGATCTCCATGTGTTCCGGTCTAATAATAGCGGAGGGCAGGCATCACTGTCGAAGACGAAGAGGTTTCGGAGCAAGTTTACACAAGAACAGAAGAAGAGGATGATGGAATATGCGGAGAAGCTTGGGTGGAAGATCCAAAAAAACTATGAACAAGAAGTACGGCAATTCTGTTCTCAGGTCGGAGTGAACAGGCAGGTTTTCAAGGTTTGGATGCACAACAATAAGCAAAGGACGAAGCAGCAGCAAGTGTAA 741 0.4534 MTTAHQNYDDDHHPKRDSSEHHHHLYFPPPSSNQRQSDPYPSLTTIVKYGECLKNHAASMGSHVVDGCGEFMPSGEEDTMESLRCAACGCHRNFHRKETEGNKPELQHISDNYYSYYSHKSNNQRHRIASPLVPSPLHQPHHRFIPPMMVAFSGGVPVESSAEDLHVFRSNNSGGQASLSKTKRFRSKFTQEQKKRMMEYAEKLGWKIQKNYEQEVRQFCSQVGVNRQVFKVWMHNNKQRTKQQQV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1448 246 MobiDBLite consensus disorder prediction 1 24 - -
Lele55g1448 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Lele55g1448 246 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
Lele55g1448 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 48 98 IPR006456 -
Lele55g1448 246 Gene3D - 168 243 - -
Lele55g1448 246 ProSiteProfiles 'Homeobox' domain profile. 180 244 IPR001356 GO:0003677
Lele55g1448 246 FunFam Zinc-finger homeodomain protein 2 169 243 - -
Lele55g1448 246 Pfam ZF-HD protein dimerisation region 47 99 IPR006456 -
Lele55g1448 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
Lele55g1448 246 MobiDBLite consensus disorder prediction 1 41 - -
Lele55g1448 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1448 Lele-ChrLele55 20683853 20684593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1448 47 246 ZF-HD Transcription Factor Family AT2G18350 48.058 1.22e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele55g1448 ZF-HD_dimer 3.3e-30 No_clan