Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1429 ATGACAACATATCACTCATCTTCATTCAGAGAGCGAGAAGGAGACACCATTATGAATCAACATCCCATTGAAGCTCAAATGGCCCTCTTCTCTCACCTATGCCCACCCGCTTCTTACAGTACTCAAATCATCCCTCAACAAGGGGAAGCGAAGCGAAGGCGACGTCGTAAGAAGGAGAAAAACCAGGAAGTGGGAGCGAAGAAGAGGAAGCTGAGCGAGGAGCAAGTGACTCTTCTGGAGCTAAACTTCGGGAACGAACATAAATTGGAGTCCGATAGAAAGGACAGGCTGGCATCGGAGCTCGGTCTTGATCCTCGTCAAGTGGCCGTTTGGTTTCAAAACCGAAGGGCTCGATGGAAGAATCAGAAGTTGGAAGAAGCCTACTCCAACCTCAAGAAACTCCATGAAACCACCCTCCTCGAGAAGGTCCACCTTGAAACTCAGGTGTCGAAGTTGAAGGAGCAGCTTTCGGAAGCAGAGAAGGAGATCCAACGGCTATTAGAGAGAGGTGAGAGATCGGTGTCGAACGATACTCGCAATAGCCCAATGTCGTCCCAGACGATGGAGGCTGTGGGGGACCCACTTTTCTTCGGGGAATTCGGAGTCGAAGGTTACGATGTCGACGATGACGTCTTGTTATACCCAACAGATCATTACATGAATTGCATGGAATGGCTCAGTTCGTACATGTGA 693 0.4935 MTTYHSSSFREREGDTIMNQHPIEAQMALFSHLCPPASYSTQIIPQQGEAKRRRRRKKEKNQEVGAKKRKLSEEQVTLLELNFGNEHKLESDRKDRLASELGLDPRQVAVWFQNRRARWKNQKLEEAYSNLKKLHETTLLEKVHLETQVSKLKEQLSEAEKEIQRLLERGERSVSNDTRNSPMSSQTMEAVGDPLFFGEFGVEGYDVDDDVLLYPTDHYMNCMEWLSSYM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1429 230 SUPERFAMILY Homeodomain-like 67 129 IPR009057 -
Lele55g1429 230 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Lele55g1429 230 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Lele55g1429 230 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Lele55g1429 230 Coils Coil 54 74 - -
Lele55g1429 230 Coils Coil 114 176 - -
Lele55g1429 230 SMART HOX_1 65 126 IPR001356 GO:0003677
Lele55g1429 230 CDD homeodomain 67 123 IPR001356 GO:0003677
Lele55g1429 230 FunFam homeobox-leucine zipper protein ATHB-40 61 130 - -
Lele55g1429 230 Pfam Homeodomain 67 121 IPR001356 GO:0003677
Lele55g1429 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 177 IPR045224 GO:0003700
Lele55g1429 230 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Lele55g1429 230 MobiDBLite consensus disorder prediction 40 69 - -
Lele55g1429 230 Gene3D - 62 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1429 Lele-ChrLele55 20539376 20540845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1429 19 230 Homeobox Transcription Factor Family AT2G18550 50.442 3.43e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele55g1429 Homeodomain 4.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0206 51 1165713 1167439 Lele55g1429 55 20539376 20540845 CCT
Lele49g0189 49 1129608 1132689 Lele55g1429 55 20539376 20540845 CCT
Lele55g1429 55 20539376 20540845 Lele49g0183 49 1105729 1110925 CCT
Lele55g1429 55 20539376 20540845 Lele51g0200 51 1130663 1136197 CCT
Lele55g1429 55 20539376 20540845 Lele52g0200 52 1194294 1200120 CCT
Lele55g1429 55 20539376 20540845 Lele55g1429 55 20539376 20540845 ECH
Lele53g0068 53 527291 528737 Lele55g1429 55 20539376 20540845 hybridization
Lele54g0069 54 567751 569204 Lele55g1429 55 20539376 20540845 hybridization