Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1422 ATGGCGAATGGGTTTGGGGAATCGACGAGCACGTCTTCTCAAAGCCCATCTTGCTCAGGGAATGATTCAAACGATGCTGGGGATTTTGAATGCAATATATGTTTCGATTTAGCCCAGGACCCAGTTATCACTCTGTGTGGTCATCTATTCTGTTGGCCATGTCTCTACCAATGGCTCCACCATCACTCGCATGCTCAAGAATGTCCGGTTTGTAAGGCTCTTGTACAGGAGGAAAAACTGGTTCCATTGTATGGAAGGGGTAAAACACAAACTGATCCCAGAACAAAGTCGTACCCTGGAATGGAGATTCCCCGCCGCCCTGCAGGGCAGAGGCCTGAAGCACCTCCTACACCAGAAGCCAATCCGTTTGGAAATTATGGGTTTGGATTGATGGGAGGATTTATACCAACGGCAACAGCTAGGATGGGAAATTTCACCCTTTCTACGGCCTTTGGTGGCTTTATCCCATCGCTTCTTAATATTCAATTCCATGGTTTTCAAGATGCCACTGTCTATGGAACAACCTCTGGTTATCCGTTTGGGTTTAATGCCTTTCATGGAGGACACACACGCGATTTCACCCACCCAACTAGTCAGGGGAATCGGCATGAGGACAATGTTTTGAAGAATCTCTTTTTGTTGGTTGGTGTACTGGTCCTCCTTGCTTTCATTTTTGGGTAG 681 0.4699 MANGFGESTSTSSQSPSCSGNDSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYQWLHHHSHAQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPRRPAGQRPEAPPTPEANPFGNYGFGLMGGFIPTATARMGNFTLSTAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGFNAFHGGHTRDFTHPTSQGNRHEDNVLKNLFLLVGVLVLLAFIFG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1422 226 CDD RING-HC_AtRMA_like 29 73 - -
Lele55g1422 226 SMART ring_2 31 71 IPR001841 -
Lele55g1422 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 94 IPR013083 -
Lele55g1422 226 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lele55g1422 226 MobiDBLite consensus disorder prediction 1 21 - -
Lele55g1422 226 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Lele55g1422 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele55g1422 226 MobiDBLite consensus disorder prediction 86 119 - -
Lele55g1422 226 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Lele55g1422 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Lele55g1422 226 SUPERFAMILY RING/U-box 27 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1422 Lele-ChrLele55 20478019 20478699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1422 21 225 C3H Transcription Factor Family AT2G23780 61.033 1.15e-89 262