Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1417 ATGGCCTGTCAGCGATTTGTTTTGACAATAATGATTGTGACCATTTTCGCTGCCAAGCTTAGTGATGCCAAGCAAGCAAAGATTATGAGTGGGTTAAGAATGAATGTGATTGATCAGTGCTGGAGATTGAACCCAGATTGGAGAAGACACAGAACACAACTTGCCACGTGCTCTGTGGGCTATGCAGGCAAGATGACAAATAACATTGGGAACGATGTCATCTACTATACAGTCACGGACCCAAGTGACGACCCCGTTAACCCGAAACCCGGAACTCTGAGATACGGAGCCTCCCTGATCCAAGCCAAAGTGTGGATCACCTTCCAAACAGACATGCTCATCAAGCTTGCCAGACCCCTTCTCATCAGCAGCTTCACCGCCATTGATGCCCGAGGTGTTGAAGTCCACATTGCTCACAACGCTTGCTTGATGATCTACAAGGCAAGCAACATAATCGTCCATGGACTTCGGGTACACCACTGCAAGGCTCAAGGTCCGGGGATGGTGATGGGTGGCGAAGGGAAGGTCATATCTCTGGGTCATGTGGATGGAGATGCAATCAGACTGGTTTCGGCTTCCAAGATTTGGATAGATCACAACACTCTCTACAGATGCTTAGATGGCCTTCTGGACGTCACGAGAGGTTCCACCGACGTGACAGTGTCCAATAACTGGTTCAGAGATCAAGACAAGGTTATGCTTCTTGGCCACGACGATGGCTACGTCAGAGACCAGAACATGAAGGTCACTGTAGTCTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCCAGGATACGACATGGGTATGCTCATGTGGCCAACAATCTGTACCAAGGATGGGTGCAATACGCCATTGGTGGAAGCATGGAGCCCAGCCTCAAAAGCGAAGCCAACCTCTTCATGGCACCAACCTCGGGGAGTAAAGAAGTGACCTGGAGAAAAAGTAGTAATGGAAAAGAGAAAGCGTTTGAATTTCATTCAGTGAGGGACGTGTTTGAGAACGGAGCTTCCTTCGCTGTAACAAAAGGTGGAAGAGTGCCAAAGCCTAATTATAACGCAGAACAAATATTCAAAGTTGCAGATGCTTCGTGTGTTAGGCCACTGACCATCTCGGCAGGCGCATTACGATGCAGTAAAACCTCAAGGTGCTGA 1158 0.4853 MACQRFVLTIMIVTIFAAKLSDAKQAKIMSGLRMNVIDQCWRLNPDWRRHRTQLATCSVGYAGKMTNNIGNDVIYYTVTDPSDDPVNPKPGTLRYGASLIQAKVWITFQTDMLIKLARPLLISSFTAIDARGVEVHIAHNACLMIYKASNIIVHGLRVHHCKAQGPGMVMGGEGKVISLGHVDGDAIRLVSASKIWIDHNTLYRCLDGLLDVTRGSTDVTVSNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFMAPTSGSKEVTWRKSSNGKEKAFEFHSVRDVFENGASFAVTKGGRVPKPNYNAEQIFKVADASCVRPLTISAGALRCSKTSRC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1417 385 PANTHER PECTATE LYASE 18-RELATED 31 382 IPR045032 GO:0030570
Lele55g1417 385 SUPERFAMILY Pectin lyase-like 32 371 IPR011050 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 325 349 IPR018082 -
Lele55g1417 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Lele55g1417 385 Pfam Pectate lyase 140 302 IPR002022 -
Lele55g1417 385 Gene3D - 34 378 IPR012334 -
Lele55g1417 385 SMART amb_all 111 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1417 Lele-ChrLele55 20456243 20457594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1417 65 312 Polysaccharide Lyase AT5G09280 72.984 1.96e-142 405