Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1416 ATGGAGGTAGCGGAATTAACCTCGGAACAGGTTTTGAGGAGGGATATCCCATGGGAGACCTACATGGCGACTAAGCTGATCTCAGGCACAAGCCTTCAGCTTTTGAGGCGTTATGATCATCGATCGCAAAGCCACAGAGAACAGTTGCTGGATGATGATGGTCCAGCTTACATTCGTGTATTTGTTCATGTTTTGCATGATGTTTCTAAAGAGGAGACTGTAGAATATGTTTTGGCGTTGGTGGATGAAATGCTTGCAGCAAACCCAAAAAGGGCTAGATTGTTTCATGATAAGTCCCTTGCTGATGTAGATACCTATGAACCTTTCTTAAGATTGCTCTGGAAAGGGAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTCAATAGTTAGTGTCCGGCCAAAAAATCAAAATGGCTTTGTTACAAATGGAGAAGCATCAAACTCAAAGAGATCACTTACTACGATTGATGATGTTTTGACAGCATTGGTGAAATGGCTTTGTGAACAGCTGAAGAAGCCTTCTCATCCTAGTCGTGGCATCCCAACCGCTGTCAATTGCCTGTCAACTTTACTCAAGGAACCCATGGTTAGATCTTCCTTTGTTAGAGTAGATGGGGTCAAGTTGCTTGTACCTTTGATTTCACCTGCATCAACTCAACAATCGATTCAGCTTCTTTATGAAACGTGCCTCTGCATATGGCTCTTGTCCTATTATGAGCCTGCAATTGAATACTTAGCTACTTCAAGATCCCTTCCGCGACTTATTGATGTCATAAAGAGCTCTACAAAAGAAAAGGTTGTTAGAGTTGTTGCCTTGACTTTTAAAAACTTGCTTTCAAAAGGAACATTGGGTGCTCAAATGGTTGACCTTCATCTGCCACAAGTTGTTCAGAATTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTAAATTACCTGGAAGAAGGGCTTAGGGATAACATTAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTTTTGGCAATCTGGACTGGTCTCCCATGCATAAAGATCCCATATTTTGGCGAGAAAATATTACCAACTTCGAAGAGAATGACTTCCAGATTCTAAAAGTCCTAATAACAATTTTGGATACGTCTGGGGATCCGAGGACTCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTCATAAATTACCATACTGCTGGGAGGGTCATCGTGATGAACCTTAAAGCCAAAGAACTAGTCATGAAACTGATGAATCATGAGAACGCCGAGGTCACTAAAAATGCGCTGTTATGCATCCAAAGGCTTTTCTTAGGTGCTAAGTTTGCAAGCTTCCTGCAGGCTTAG 1359 0.4165 MEVAELTSEQVLRRDIPWETYMATKLISGTSLQLLRRYDHRSQSHREQLLDDDGPAYIRVFVHVLHDVSKEETVEYVLALVDEMLAANPKRARLFHDKSLADVDTYEPFLRLLWKGNWFIQEKSCKILASIVSVRPKNQNGFVTNGEASNSKRSLTTIDDVLTALVKWLCEQLKKPSHPSRGIPTAVNCLSTLLKEPMVRSSFVRVDGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRSLPRLIDVIKSSTKEKVVRVVALTFKNLLSKGTLGAQMVDLHLPQVVQNLKAQAWSDEDLLEALNYLEEGLRDNIKKLSSFDKYKQEVLFGNLDWSPMHKDPIFWRENITNFEENDFQILKVLITILDTSGDPRTLAVACFDLSQFINYHTAGRVIVMNLKAKELVMKLMNHENAEVTKNALLCIQRLFLGAKFASFLQA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1416 452 PIRSF V-ATP_synth_H 1 450 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele55g1416 452 Gene3D - 3 331 IPR011989 -
Lele55g1416 452 SUPERFAMILY ARM repeat 9 442 IPR016024 -
Lele55g1416 452 Pfam V-ATPase subunit H 329 441 IPR011987 GO:0000221|GO:1902600
Lele55g1416 452 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 451 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele55g1416 452 Pfam V-ATPase subunit H 5 323 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele55g1416 452 FunFam V-type proton ATPase subunit H 343 444 - -
Lele55g1416 452 Gene3D - 344 444 IPR038497 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1416 Lele-ChrLele55 20450665 20455620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1416 1 452 Primary Pumps ATPases(2) AT3G42050 75.664 0.0 718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0082 53 608177 613167 Lele55g1416 55 20450665 20455620 hybridization
Lele54g0083 54 667468 682968 Lele55g1416 55 20450665 20455620 hybridization