Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1414 ATGAGACAGCGCGTGGGACTACGGATTGCATGCAAAAGTTACCAAAGATATGAACTTGTACTTGAGCTCCGATTCTTAACATTCCTTACTCTCTCCAAATTCTTAATCTCTTCCTGGAATAAGTTAGCGGATCTGCACGCAATAATAATAATCCATATTATGGGTTGGTTTACAAAGTTCATTAAGGGCTCCAACCATAAAATTTCTAGCGGGAAATATGGAAATGACAAAATTTGGGATGACCATCGTAATTCAGTGGATGATTTGACTGATATTGAAAAAGAAGACATTGATCATGCAATTGCACTCTCTCTATCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGTATGACTCAGAGTCAGAAGATGAAGAACTTTGTCCAATTGATGAGGAGGAAGATGAACATCTCGGTAAAGTTCATGGAGAGGAAGATGAACATCTCAGTAAAGTTCATGAAGAGGAAGCTGAAAGTCTTGATAACATTCAAAAGGATGAAGATGAACATCATGCAAAACTTCAACTTGAGGAAGATGAACAACTTGCGAGAGCAATTCAAGAAAGTTTAAGCATGGGTTCTCCTACTCGAAATGACACGGGTTCTTTATTTCAACCATTTCCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAATTCTGAGATTGGCCATGGAAGATTTTTAAGCTGTATGGGAGGCGTCTGGCATCCAGAATGTTTCCGTTGTCAAGCTTGCAATCTTCCAATTACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCGTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACAAATTCAGCTGGACTCATTGAATATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCATCACATGAGCGTGACGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCGAGGGATGCAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCCATGCTTTTGGTCGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGGCTTTGCTTGTCGGAAGAGCAGACTGTGACCACTATTTTAAGGAGACCAAAGATCGGAGCAGGCTACCGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGTTAACTGGATCAATCCTTGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCCGAAGTTGAAGAAGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGGATCTGGGAGGGATGGTGCGTCATCCTCCTCATCGTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCGTCAAAGAAGGGCAAAAGGTCCGACTTTGAGAAGAAACTGGGTGAGTTTTTTAAACATCAGATTGAATCAGATACCTCATCAGCTTATGGAGATGGATTCAGATTGGGGAACCAGGCAGTGGTCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAAGTTTTCCAGTATGA 1764 0.4223 MRQRVGLRIACKSYQRYELVLELRFLTFLTLSKFLISSWNKLADLHAIIIIHIMGWFTKFIKGSNHKISSGKYGNDKIWDDHRNSVDDLTDIEKEDIDHAIALSLSEEDQKGKKVIEYDSESEDEELCPIDEEEDEHLGKVHGEEDEHLSKVHEEEAESLDNIQKDEDEHHAKLQLEEDEQLARAIQESLSMGSPTRNDTGSLFQPFPLFSTGYRICAGCNSEIGHGRFLSCMGGVWHPECFRCQACNLPITDYEFSMSSNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPKIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSGSGRDGASSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAVVKYGLRRTLDHIQLTGSFPV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1414 587 Gene3D Cysteine Rich Protein 209 275 - -
Lele55g1414 587 MobiDBLite consensus disorder prediction 506 529 - -
Lele55g1414 587 ProSitePatterns LIM zinc-binding domain signature. 217 251 IPR001781 -
Lele55g1414 587 SMART uim 92 111 IPR003903 -
Lele55g1414 587 SMART uim 177 196 IPR003903 -
Lele55g1414 587 CDD LIM_DA1 217 269 - -
Lele55g1414 587 MobiDBLite consensus disorder prediction 506 533 - -
Lele55g1414 587 FunFam Protein DA1-related 1 211 270 - -
Lele55g1414 587 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 177 196 IPR003903 -
Lele55g1414 587 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 298 - -
Lele55g1414 587 Pfam Protein DA1 366 581 IPR022087 -
Lele55g1414 587 ProSiteProfiles LIM domain profile. 215 275 IPR001781 -
Lele55g1414 587 PANTHER PROTEIN DA1-RELATED 2 56 586 IPR045218 -
Lele55g1414 587 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 242 - -
Lele55g1414 587 SMART lim_4 216 268 IPR001781 -
Lele55g1414 587 Coils Coil 160 180 - -
Lele55g1414 587 Pfam LIM domain 217 272 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1414 Lele-ChrLele55 20442365 20449279 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele55g1414 DA1-like 6.1e-107 CL0126