LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g1412	ATGGGAATAGCGACACCGCCAGTTCTTCCGCCGATTCTTTCTCACTCCTCCGCCAAGCCCCACCATTCGTTTTCTTCCGTATTAGACTCCAATTCTATGTCCCAAGATTATCACCAAGGAATCTTCACCTTCTCGAATGGGTTCGAGAGATCCACTCTAACTCAGCAGCAGCAGCAACAGTTAGCGCAGCAGATCCGTAGAGATAAGGTGAGGGTGCAAGGCGGGTTGGACCCGCCGCCTCCGCTAGTGGGTATAGAGGAAGAAGAATCTGGAAACCTTCCCGTGTATGAAACCGGAGGGATGTTATCGGAGATGTTCAATTTCCCTCCTCCCAGCGCCACCGCCACTGAGTTGTTGGAACAACAACATCAGCAAACGGCTGCGACGGCGATGTATCGGGCCTCCAGGCCGCCACCGGTGGCCACTGATTGGTACAGACAAGGGATGTTAAGCGGGTTGGGAGATTCAAAGAATCATCAAAATAGCCGTGACAATAGTAGTATACTAGAGCAACATCATCATCATCATCCTCAGATTTCGAGCATGAATGCGGACTCAGCTGCCGCCATGCAGCTTTTTCTGATGAACCCACAAACGAGATCGCCTTCTCCTACAACTCAGAACCACACTACTCCTAATTCAACTTCTCTCCAAGGCTTCAGTACTCATCAAGGAGGGGGTTTCGGTCAATTCACATGGCTTCCCCATAGTTCTCAGCAAGGAGCACCGGCCACGGCCGGTAATCCACCTCAAATTGGTATGGAAGCTCAAGGTCTTTCCTTATCGTTATCGTCGTCGTTGCAACACTTGGAAGCGGCGAAAGCTGAGGAATTGAGGGTGGGAGACAGCGGGTTTCTGTATTACAATCAAGGATCCGGAGGGTCTTCGTCTGCTCAGTATCCGTACAAAACATTGCATTTCCAAGGGTCCGTCGGAGCAGGCCAGAACCACCAGGGACATGTCGGGTTCGGGTCATCATTAGGGGTGGTGAATGTGCTAAGGAATTCAAAGTACGTGAAAGCTGCTCAAGAATTGCTCGAAGAATTCTGCAGCGTTGGGAGAGGACAGTTCAAGAGGAACAAGTTCACCAGGCAAAACTCAAACCCTAGTTCCAACCCTGGTGGTGGTTCTTCGTCTTCATCTAAGGATCCTCCTCCTTTGTCATCGGCCGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGATAGGAGATACAACCACTACTGCGAACAAATGCAGATGGTGGTGAACTCATTTGACATGGTGATGGGATTCGGGTCGGCGGTGCCATACACGGCGTTAGCTCAGAAGGCGATGTCACGCCATTTCCGGTGCCTGAAGGACGCGATAACGGCGCAGCTGAAGCACAGTTGTGAGCTGCTGGGAGAGAAAGACGGAGCAGGAAGCTCAGGGATAACCAAAGGAGAGACCCCAAGGCTGAAACTTCTGGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCCTGGCGACCCCAAAGAGGCCTCCCTGAGAGATCCGTCAACATTTTACGAGCCTGGCTCTTCGAGCATTTCCTTCATCCGTATCCAAGCGATGCTGATAAGCATCTGTTGGCTCGACAGACTGGCCTCTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGCTGTGGAAACCTATGATAGAAGAAATGTACCAACAAGAACTTAAAGAAGCAGAAGGAGAAGAGAGAGAAGAAAGGAACCAAAGCAACAGCAGCAGCAGCAACCTCGCACAAACTCCAACCACAGCAGCAGCAACTTCAACAGAAGCAGCGCCACCACCATCCACAACAACAACAACGACACTCACAACAACAGCTGCTGCTGCAGCAGGCAAAAGATCCCAAATCAATGCTTCTGATAGCGACCCTTCACTCATTGCAATCAATACCCAACCCTTCTCGGAATCCCAGCCACACTACTCTTCCTCTGCCATCACCACCGCTCCTACCGCCGCACTTGCCGCCACTTCTGAGGTGGCGCCACCCTCGTCTCTGTGTTATGACTCAGGCCTGCCCCCTCACAGATCCATGCCTACAGACGATACGTGTCGCCATGGCAGACTCATTGCAGCAGATTACGGGACCGCCTCTGGTAATTCTGACATTGGTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCCCTCACCCTAGGGCTACGCCACGCCGGCAACATCCCTGAGAAAGCCCCTCCTTTCTCTGTTAGAGACTTCGGAGGCATTTGA	2313	0.5162	MGIATPPVLPPILSHSSAKPHHSFSSVLDSNSMSQDYHQGIFTFSNGFERSTLTQQQQQQLAQQIRRDKVRVQGGLDPPPPLVGIEEEESGNLPVYETGGMLSEMFNFPPPSATATELLEQQHQQTAATAMYRASRPPPVATDWYRQGMLSGLGDSKNHQNSRDNSSILEQHHHHHPQISSMNADSAAAMQLFLMNPQTRSPSPTTQNHTTPNSTSLQGFSTHQGGGFGQFTWLPHSSQQGAPATAGNPPQIGMEAQGLSLSLSSSLQHLEAAKAEELRVGDSGFLYYNQGSGGSSSAQYPYKTLHFQGSVGAGQNHQGHVGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFTRQNSNPSSNPGGGSSSSSKDPPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGSSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEEMYQQELKEAEGEEREERNQSNSSSSNLAQTPTTAAATSTEAAPPPSTTTTTTLTTTAAAAAGKRSQINASDSDPSLIAINTQPFSESQPHYSSSAITTAPTAALAATSEVAPPSSLCYDSGLPPHRSMPTDDTCRHGRLIAADYGTASGNSDIGSTLIRFGTTAGDVSLTLGLRHAGNIPEKAPPFSVRDFGGI	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g1412	770	SUPERFAMILY	Homeodomain-like	514	579	IPR009057	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	1	30	-	-
	Lele55g1412	770	ProSiteProfiles	'Homeobox' domain profile.	509	572	IPR001356	GO:0003677
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	596	628	-	-
	Lele55g1412	770	SMART	HOX_1	512	576	IPR001356	GO:0003677
	Lele55g1412	770	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	197	598	-	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	360	394	-	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	197	246	-	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	582	628	-	-
	Lele55g1412	770	Gene3D	-	515	577	-	-
	Lele55g1412	770	SMART	prehox3	327	460	IPR006563	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	360	386	-	-
	Lele55g1412	770	Coils	Coil	575	595	-	-
	Lele55g1412	770	MobiDBLite	consensus disorder prediction	197	254	-	-
	Lele55g1412	770	CDD	homeodomain	512	573	IPR001356	GO:0003677
	Lele55g1412	770	Pfam	Homeobox KN domain	529	568	IPR008422	GO:0003677\|GO:0006355
	Lele55g1412	770	FunFam	BEL1-like homeodomain protein 4	515	577	-	-
	Lele55g1412	770	Pfam	Associated with HOX	332	459	IPR006563	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g1412	Lele-ChrLele55	20413314	20419047	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g1412	730	770	Homeobox Transcription Factor Family	AT2G23760	69.048	1.79e-10	62.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele55g1412		POX	9.3e-52	No_clan