Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1377 ATGGTGAATCTAAGATGCTATCTGGACATTAGCATTGGAGGAGAGTTAGAGGGTAGGATTGTGATCGAGCTCTTCAAAGACGTCGTCCCCAAGACTGCCGAGAATTTCAGGGCTCTCTGTACTGGTGAGAAGGGCCTTGGTCCCTACACCGGAGTTCCCCTGAGTTACAAGGGTGCAAGGTGGAGATATCTCTGCTGGCGATGGCACTGGAGGAGATCCATTTATGGGTTGAAATTTGAGGATGAGAATTTTGAGTTGAAACATGAGAGGAAAGGGATACTGTCGATGGCTCATTCAGGTCCCAGCACCAATGGATCACAATTTTTCATTACTACTACTCGGACTCCTCATCATTTGGATGGAAAGCACGTAGTGTTTGGAAAGGTGATAAAAGGAATAGGTGTTGTGCGTTCTATCGAACATGTTATTACTGGGGAAGGTGACTGTCCCACCCAAGATTCCATCATTGCTGATTATGGAGAAATAGCTGAAGGGGATGATGATGGAACCATAAACTTCTTTAAAGACGGCGATACTTTTCCTGATTGGCCAGCTGACCTAAGCGTGAAGCCAGATGAAATTTCTTGGTGGATGGAGGCTGTTGATTCTATCAAAGCTCTGGGAAATGAACAGTATAAGTGTTGCCATATCATTTCCAACATGCAGAAGCAAGATTTTAAGTCTGCCCGTCGTAAGTATCGTAAAGCTTTGCGTTATTTGGATGTCTGCTGGGAAAAGGACAACATTGATGAAGGTCAACCTGATAGTTTGGCTTATGTTACTTGTGCTGTCCTGAATTATCTGTCCTGGCTCCTATTTAGCACTTTTAGAGTTTTAGCATGTCGCAGATCTTTTTCTGAATTCCCAGAGAAGAGCACTGCTTTGAGAAAGACAAAATCTCAAATTTTTACTAACAGTTCTGTAAGTACCATCTCTCATAAATAAGTGAATAGACCTGAGGCCCAGAAAGGAAAAAAAAAAAATGGAACCAAACTCGAAGGGTGTGAAGCTAATGAAATGGAAGGTGCTTTTTCAGTTGCCGCAGCACGAAATTGA 1056 0.4299 MVNLRCYLDISIGGELEGRIVIELFKDVVPKTAENFRALCTGEKGLGPYTGVPLSYKGARWRYLCWRWHWRRSIYGLKFEDENFELKHERKGILSMAHSGPSTNGSQFFITTTRTPHHLDGKHVVFGKVIKGIGVVRSIEHVITGEGDCPTQDSIIADYGEIAEGDDDGTINFFKDGDTFPDWPADLSVKPDEISWWMEAVDSIKALGNEQYKCCHIISNMQKQDFKSARRKYRKALRYLDVCWEKDNIDEGQPDSLAYVTCAVLNYLSWLLFSTFRVLACRRSFSEFPEKSTALRKTKSQIFTNSSVSTISHKXVNRPEAQKGKKKNGTKLEGCEANEMEGAFSVAAARN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1377 351 Gene3D - 193 269 - -
Lele55g1377 351 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 57 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 77 158 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 161 - -
Lele55g1377 351 Gene3D - 1 63 IPR029000 -
Lele55g1377 351 Gene3D - 69 168 IPR029000 -
Lele55g1377 351 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Lele55g1377 351 SUPERFAMILY Cyclophilin-like 2 162 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1377 Lele-ChrLele55 20207165 20208892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1377 18 153 U-box Gene Family AT5G67530 38.028 4.35e-18 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1377 55 20207165 20208892 Lele49g0248 49 1444066 1445650 CCT
Lele55g1377 55 20207165 20208892 Lele50g0261 50 1515896 1529110 CCT
Lele55g1377 55 20207165 20208892 Lele51g0258 51 1465097 1470995 CCT
Lele55g1377 55 20207165 20208892 Lele52g0266 52 1549683 1551274 CCT
Lele54g0110 54 881742 889281 Lele55g1377 55 20207165 20208892 hybridization