Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1366 ATGACGCAGCGGTCGGTGCCGGCGCCGTTTCTGACAAAGACGTACCGATTGGTGGACGACGAGCTGACCAACGACGTGATATCGTGGAGCGAAAGCGGCGACACGTTCGTGGTGTGGAAGCAGGCGGATTTCGCCAAGGATTTGCTTCCCAATTATTTCAAGCACAACAATTTCTCTAGTTTTGTTCGTCAGCTTAACACTTACGGATTCCGAAAGATAGTCCCCGACAAATGGGAATTCGCGAACGAATATTTCAAGCGAGGACGCAAGGAGCTCCTCTCCGAGATCAAACGCCGGAAGACTCTCACACAAGCCTCCGGGAAGTCCGGCAGCGGGGCATCGAACTCCGGCGCCGGCGACGACGCGGGGTCCGCCTCCACTTCGTCGAGTGATTCGAAGAATAACCCGGCGGGGGTGGCAGAATACGCAGAGTTATCGGGAGAGAACGAGAAGCTGAGAAAAGATAACGAAATGCTGAGCTCAGAGCTGGCGGAAACGAAGAAGCAATGTGAGGAGCTGGTGGGTTTTCTGACGGAGTACCTGAAGGTGGGGCCCGATCAGATAAATCGTATAATATTGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGGAGGAGGAGGAGGAGGAGGACAAGAAGATGAGGACGAAACGAAGGTGGTTGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGGTTTGGTTGAGAGGGGAGAAAGAAACGACGGAGGAGGAGAAAATGAGGACCAACAACAAGAGAGCGCGCGAGGACCAAATGGCCTTTGGTGGGACCCAGCCATCCAAGGAGCTGAAGAAGACGCTGCATTTTGGTGCTTCTCCTGTGAAGGTCATGATCAATTGA 858 0.5373 MTQRSVPAPFLTKTYRLVDDELTNDVISWSESGDTFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSEIKRRKTLTQASGKSGSGASNSGAGDDAGSASTSSSDSKNNPAGVAEYAELSGENEKLRKDNEMLSSELAETKKQCEELVGFLTEYLKVGPDQINRIILRQGTSGSSREGGGGGGGQEDEDETKVVGEGGESLKLFGVWLRGEKETTEEEKMRTNNKRAREDQMAFGGTQPSKELKKTLHFGASPVKVMIN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1366 285 FunFam Heat stress transcription factor B-4 2 100 - -
Lele55g1366 285 Coils Coil 142 169 - -
Lele55g1366 285 MobiDBLite consensus disorder prediction 194 221 - -
Lele55g1366 285 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 Gene3D - 2 101 IPR036388 -
Lele55g1366 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 218 IPR027725 -
Lele55g1366 285 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lele55g1366 285 MobiDBLite consensus disorder prediction 103 136 - -
Lele55g1366 285 MobiDBLite consensus disorder prediction 238 268 - -
Lele55g1366 285 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele55g1366 285 MobiDBLite consensus disorder prediction 238 254 - -
Lele55g1366 285 MobiDBLite consensus disorder prediction 103 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1366 Lele-ChrLele55 20048777 20050756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1366 3 239 HSF AT4G36990 58.436 2.55e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele55g1366 HSF_DNA-bind 1.1e-32 CL0123