Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1363 ATGGAGCAGCGTAAACTTGTGGTTAAATATCCTATTATGCGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAGTTGATGATGCTAAGAAAGCATTATCAAGCGAACATGTTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAGAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGCGAGATAACTGATTTATACATGCCAAAGGACCAGGGCTCAAAATCGCACCGTGGAATTGGTTTTATAACTTTTGCTAATGCAGAATCTGTGGAGAATTTAATGGCAGATACTCATGAATTGGGAGGTTCTACTGTGGTGGTTGATCGGGCAACACCAAAGGCAAGATTTTGTATAGAAGATGATTTCAGGCCTATTGGCAGAATGTCGCAGGGAGGGCCTATTGGCAGAATTTCGCAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTCGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCTCAGTTTATGGAAGGGGAGAACCAGTTTGTGGAATGGGCAAAAAAATTTTTGTTGGTCGTCTTCCCCCTGAAGCAACAGCTGATGATCTTCGCCAGTATTTTGGAAGATTTGGCCGTATATTAGACGTATATGTTCCAAAGGATCCCAAGAGAGCGGGCCATAGAGGTTTTGGTTTTGTAACTTTCGGTGAAGATGGTGTGGTAGAGCGTATCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCTATAGATTCAGCCACACCTCTTGATGATGCTGGGCCCAGTTCGAATTTTATGATGAGCAGTGTGGATACTTTTGGGGGATATGGTGGTCCTATGCGCACCTATGGGAGGATGTATGGTAGCCTAGACTTCGATGATAACAATCTGCTAAAGCCTAGACTATTGAATTTAAGTGCATATTTTGAACTGGGGCACATTATTTGGTTTTGCAGTGGGGTTATGGAATTGGCAGTGCGAGACCATCAAGAGCAGATTGGAGGTATAGGCCATACTAGGGAACGTGGTTTTGTTGAAGGTTCTGTCTGTCGCGCATTAGTTTCAACTACTAGTGGTGCAGACTGGGCTCCATATTTTGACGATGGAGGAACAGATAATGGAAGCCGTCATCATGTTGTATGTGAAATTATTGAAGCCACCATAGCAGGTTACAAGTTTTCTACCCTCCTGAATTCACCCAATGATGTTGTGCATGGCAACATAGACATTCTCTGA 1338 0.438 MEQRKLVVKYPIMRSTGRSRGFGYVTFASVDDAKKALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKSHRGIGFITFANAESVENLMADTHELGGSTVVVDRATPKARFCIEDDFRPIGRMSQGGPIGRISQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPVCGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFGEDGVVERISRRSHEICGHQVAIDSATPLDDAGPSSNFMMSSVDTFGGYGGPMRTYGRMYGSLDFDDNNLLKPRLLNLSAYFELGHIIWFCSGVMELAVRDHQEQIGGIGHTRERGFVEGSVCRALVSTTSGADWAPYFDDGGTDNGSRHHVVCEIIEATIAGYKFSTLLNSPNDVVHGNIDIL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1363 445 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 212 321 - -
Lele55g1363 445 SUPERFAMILY RNA-binding domain, RBD 64 153 IPR035979 GO:0003676
Lele55g1363 445 Gene3D - 64 147 IPR012677 -
Lele55g1363 445 SUPERFAMILY RNA-binding domain, RBD 11 61 IPR035979 GO:0003676
Lele55g1363 445 FunFam heterogeneous nuclear ribonucleoprotein 1 59 155 - -
Lele55g1363 445 Gene3D - 210 292 IPR012677 -
Lele55g1363 445 SUPERFAMILY RNA-binding domain, RBD 213 312 IPR035979 GO:0003676
Lele55g1363 445 FunFam RNA-binding family protein isoform 1 210 293 - -
Lele55g1363 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Lele55g1363 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 40 IPR000504 GO:0003723
Lele55g1363 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 261 IPR000504 GO:0003723
Lele55g1363 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 135 IPR000504 GO:0003723
Lele55g1363 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 289 IPR000504 GO:0003723
Lele55g1363 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Lele55g1363 445 Gene3D - 3 63 IPR012677 -
Lele55g1363 445 SMART rrm1_1 214 285 IPR000504 GO:0003723
Lele55g1363 445 SMART rrm1_1 68 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1363 Lele-ChrLele55 20013236 20019455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1363 17 262 Eukaryotic Initiation Factors Gene Family AT2G36660 21.825 2.27e-09 57.8