Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1357 ATGGGGGATTTGTACGGCTTTGGAAAGACTACTACCATTATTCCCTCTCCGTCTTCTTCAACCTCACCTCCAGACGACTTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTCCATGTTCCTCCGCCGCCGTACCGCCCCCGTCTTCCCTCCTACTCACCCACGTGCCTGAGAACGCACCTAATAACACTTTTGAGCATGAAAATGAAAGCCTTTCGTACCCATCTTCTCTTCTTGAAGACGTGATCCCAGGCGTTGGTTCTACCTCTAAAAACCATGCCTTTCTCTCGGCTTATATCAAGGGTAGTTCTGCTGCAAATGTGTCTTCCTCCTCGGTCGGAGTAAGTGGGAATGAGACTGATGACTATGATTGTGAAAGTGAGGGTGGTACGGTGGAAGCAATGGTCGCGAAGTCAGTTCCTCCAAGGCGCTCATCGAAGAGAAGCAGAGCTGCAGAAGTTCATAACTTGTCTGAGAAGCGAAGGAGGAGTCGTATCAACGAAAAGTTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGATAAAGCTTCAATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTCCAGATGCTTTCTGCGAGAAATGGATTGAATATGCTTCCTGAGTGCTTCCCCGAAGGCTTGCAGACTCTGCACTTGTCTCAGATGAGCGAAGAAGAAGACGGGTCATGTCCTTTAAACTTAACTGCTACTTTGCCTCTTGACAAACGCACTGTGCCCTCTCCATCAAATATAATCAACTCAGAAACACCTTTTGGGCTGGATTCCCAAATCATAGGGCATCTTCGACCCTTTGAGCTCACAACATCATCTTCTGAGATATGCAGGGAGGACATATTGCAGCACCAGAAATTAAATGCGGAAGATTCAAATACCAATCCTTTGGGTGATTCTCAAGCTGTACGAGAATTCGAGTCAGGCACATTGGCTACAGTATCACTCTCCTTTGATAAGCAAAACAACCGAAGTGAAGGAGAATTGAAAGCATGCACTGCAAGAGATTAG 1047 0.4575 MGDLYGFGKTTTIIPSPSSSTSPPDDFSLFLHQILLPPCSSAAVPPPSSLLLTHVPENAPNNTFEHENESLSYPSSLLEDVIPGVGSTSKNHAFLSAYIKGSSAANVSSSSVGVSGNETDDYDCESEGGTVEAMVAKSVPPRRSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSARNGLNMLPECFPEGLQTLHLSQMSEEEDGSCPLNLTATLPLDKRTVPSPSNIINSETPFGLDSQIIGHLRPFELTTSSSEICREDILQHQKLNAEDSNTNPLGDSQAVREFESGTLATVSLSFDKQNNRSEGELKACTARD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1357 348 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 22 286 IPR031066 -
Lele55g1357 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Lele55g1357 348 CDD bHLH_AtPIF_like 149 211 - -
Lele55g1357 348 FunFam Basic helix-loop-helix transcription factor 144 207 - -
Lele55g1357 348 Coils Coil 188 208 - -
Lele55g1357 348 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
Lele55g1357 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 209 IPR036638 GO:0046983
Lele55g1357 348 MobiDBLite consensus disorder prediction 145 161 - -
Lele55g1357 348 MobiDBLite consensus disorder prediction 140 161 - -
Lele55g1357 348 SMART finulus 155 204 IPR011598 GO:0046983
Lele55g1357 348 Gene3D - 144 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1357 Lele-ChrLele55 19974111 19976189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1357 117 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.202 5.84e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g1357 HLH 1.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0295 50 1719608 1729525 Lele55g1357 55 19974111 19976189 CCT
Lele51g0295 51 1673570 1675975 Lele55g1357 55 19974111 19976189 CCT
Lele52g0303 52 1788860 1794112 Lele55g1357 55 19974111 19976189 CCT
Lele53g0135 53 1063536 1065588 Lele55g1357 55 19974111 19976189 hybridization