Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1356 ATGCATCCTCATGCCTCTACTTTTGCATATGGTGTTGTTTATGCTGCATTTGCAGTATGTGATCAAAGGTTCCCTGATCAGGTTTCAGGGTCAAATCATGTCGGTTATAAAGAGAGTATAAATATTGTTCCGAATAATGATCAAAGTGCTGCTGTTTGTCCTCATGAATCATCTGACGCATTGAGGTTTTCTTCTTTAACTTCCCTTACGGGAAATATTATAAGGTTCCCAGATGGGCTTTCTGGATCAAGTGATCTCCATTGTCAAGCAAGTCTTCAGGCTTCTGAAGTCTATGGCAGCAATGGTCTAAACATATCTACTCCATGTACTAGCCCTATTAGTCATCAAGAACAGTCTGTTACCATTATTGGTCATGGTACTATAAGGCCAGTTTCTGATATGCAGCATCTGAATGCAGCAAGACTATCTGAAAACTTCCTAAGTAACATTCATCATCATACAGCTGCAAATCAACAAGCTTTTCTACCAATCAGCATTTTGGCCTCAAGTAGCACCAGGAATGCTCATATTCAGTTACCCAGTCAGTCACCTTTTTATGGCCAAGACAACCATCCTCCTTTCTTCAGGTCTGCAGAAAGTTCCATTAGTCCAATTCCCTCAATGCAGCCAGATGAGCATGTTCCTAATGTTCATGAAACTTCACTGGCTCCCCCTGGGATTCACATGATGAGATCAAGTAGTGGGTTTTCTTCATTTTTGCCTGTCTATACTGCAGCGGAAAGTGAGGCTGTGGCACCCCTTCATTACCCAAGAAACATAATTGAAAGCATCATGACCGGCCTCCAAATTGGGAGGAGAAATTGGGTACATGATGCAAGAAACTCACATTTCGTTACTGCAAACTTCCATGGAGATGTCTGTCCCCTTCATGGTTTTGCTTCTGATACAATTCATTTAGCAAATGCCCCTACTTGGTGCCCAGCAGATTCAGACCCTTCAGCGGTCATACAGGAAATGGGCTTTGCTGTTGGATTTGGTAATTCTGTATCTCAGAATCAGCATACATCAGGAGCAAGATACGAGAATCAATTTACATGGTCACTTGCTAATGCTCGAAATAGAATGTGGCTGAGGCCTGAGAATCTGCACACATCAGAAGCAAGACTCGAGAATGAAGATGATAGCCATCATGATCTCCTTTACCATCATTTTTGGTCACCTGCTAATGCTGAATATAGAAGGAAGCTGAGTCTTGCGCTTCACCATCTCCTTGACCAACTGCACAGGATCAGTGGTGACCCCTTGCGGCCTACGACGATTCCACGGGAATTGAGGATGTTGGACCATTCAGTTATGATGGATATGCTTCGGGCGCATGGCATTGTAGATGAAGCGCATTTTGATTTAGACAACTGGACATCTGAGGATGTTGCTGAACAAGCAGAGCCTAATAACGTACCAGAGATGGGGCTGAGTGAGGAAATGATTCTCGGCCACCTCTGGCAGGAAAATTTCCAGCCCAAAGCAGATGAGTCTGAGGAAAATGAATGCTGCTGCATATGTCAGGAGGATTACCAAAAGAATGAAGGTCTGGGTAAGCTGTGTTGTGGCCACAGATTTCATGCAGAGTGTATCAAGTCATGGCTGGAGCTGAAGAACATCTGCCCCATTTGCAAACAAATTGCACTCCCTATTTATCTTTGA 1665 0.436 MHPHASTFAYGVVYAAFAVCDQRFPDQVSGSNHVGYKESINIVPNNDQSAAVCPHESSDALRFSSLTSLTGNIIRFPDGLSGSSDLHCQASLQASEVYGSNGLNISTPCTSPISHQEQSVTIIGHGTIRPVSDMQHLNAARLSENFLSNIHHHTAANQQAFLPISILASSSTRNAHIQLPSQSPFYGQDNHPPFFRSAESSISPIPSMQPDEHVPNVHETSLAPPGIHMMRSSSGFSSFLPVYTAAESEAVAPLHYPRNIIESIMTGLQIGRRNWVHDARNSHFVTANFHGDVCPLHGFASDTIHLANAPTWCPADSDPSAVIQEMGFAVGFGNSVSQNQHTSGARYENQFTWSLANARNRMWLRPENLHTSEARLENEDDSHHDLLYHHFWSPANAEYRRKLSLALHHLLDQLHRISGDPLRPTTIPRELRMLDHSVMMDMLRAHGIVDEAHFDLDNWTSEDVAEQAEPNNVPEMGLSEEMILGHLWQENFQPKADESEENECCCICQEDYQKNEGLGKLCCGHRFHAECIKSWLELKNICPICKQIALPIYL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1356 554 ProSiteProfiles Zinc finger RING-type profile. 505 546 IPR001841 -
Lele55g1356 554 SMART ring_2 505 545 IPR001841 -
Lele55g1356 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 550 IPR013083 -
Lele55g1356 554 Pfam Ring finger domain 505 546 IPR001841 -
Lele55g1356 554 SUPERFAMILY RING/U-box 499 550 - -
Lele55g1356 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 550 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1356 Lele-ChrLele55 19968982 19973142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1356 431 550 C3H Transcription Factor Family AT2G15530 41.538 2.92e-21 95.9