Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1350 ATGTGCTCCCATATCAAATGCAGATCACTTTCCATTGGCTTTGGCTTCCTCTTTCTCCTACTCTTCTCTTTACTCTTCACCACTTCCATTGCCTGCTCTAACGGCAATTGCCAGGTTCTGGAGCCATGTTCGGCGGCTACAGATTGCGGGTCAGGTCTCTATTGTGGCAACTGCCCTGCTCTGGGTAGGACGCAACCTGTCTGCACCAGAGGTCAAGTCACCATTCCTACAGCTATAATTAATGACTTGCCATTCAACAAGTACACGTGGATTGTCACTCACAATTCATTCAGCATCGTTGATGCACCGCCCTTGCCGGGCGTTCAGAGGCTAACACTTTACAATCAAGAAGATACTGTGACTAACCAGTTGAAGAATGGAGTGAGGGGACTGATGTTAGACATGTACGACTTCCAGAATGATATCTGGCTCTGCCATTCATTCAAGGGGCAATGTTTCAACTTCACTGCCTTTCAACCTGCAATCAATACATTAAAAGAGGTGGAAGCATTCCTGACCGAAAACCCTACAGAGATTGTCACCATTATAATTGAAGACTATGTGCACACTCCCAAGGGGTTGAGTAATCTATTCACTAATGCTGGGCTGGATAAATATTGGTTTCCTGTGTCTAAGATGCCAAAAAAGGGTCAAGATTGGCCCACTGTAGCAGAAATGGTTCAAGCAAATCACCGTCTTCTTGTTTTTACTTCTGTTGCTTCAAAGGAAGCCGAAGAAGGAATAGCTTATCAGTGGAAGTATATGGTTGAAAATGAGTCTGGAGATCCTGGAGTTCAACCAGGGTCTTGCCCACATAGAAAAGAATCAAAGCCTCTGAATTCTAGGAGTGCATCACTTTTCTTGGAGAATTACTTTCCAACATATCCAGTTCAAGCTGATTCGTGCAAGGAGCATTCAGCTCCACTTGCAGAGATGGTGAATACATGTTACAAAGCTGCAGGGAATGTACTTCCCAATTTTGTAGCAGTTAATTTTTACATGAGGAGCGATGGAGGTGGTGCTTTTGATATTGTGGATAAAATGAATGGCCACTCATTGTGTGGGTGCAATACAGTCACCGCTTGCCAGGCTGGAGCACCTTCTGGTTCTTGCAAGAACACTGCTACACCTAGTACAAATCCAGTGGGCAATGCTGCTGGAAGCTCTGGAAGCTTTACCGGATCTGTTCAATTCTCTAATTCAGCTTCTGCTGTCTACTCTCCAAAATGGATGCCTCTCCTCTTGTATTTTCCATTTATTTTTGCAGTTTTGTTACAGCTATCATGA 1287 0.4429 MCSHIKCRSLSIGFGFLFLLLFSLLFTTSIACSNGNCQVLEPCSAATDCGSGLYCGNCPALGRTQPVCTRGQVTIPTAIINDLPFNKYTWIVTHNSFSIVDAPPLPGVQRLTLYNQEDTVTNQLKNGVRGLMLDMYDFQNDIWLCHSFKGQCFNFTAFQPAINTLKEVEAFLTENPTEIVTIIIEDYVHTPKGLSNLFTNAGLDKYWFPVSKMPKKGQDWPTVAEMVQANHRLLVFTSVASKEAEEGIAYQWKYMVENESGDPGVQPGSCPHRKESKPLNSRSASLFLENYFPTYPVQADSCKEHSAPLAEMVNTCYKAAGNVLPNFVAVNFYMRSDGGGAFDIVDKMNGHSLCGCNTVTACQAGAPSGSCKNTATPSTNPVGNAAGSSGSFTGSVQFSNSASAVYSPKWMPLLLYFPFIFAVLLQLS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1350 428 FunFam PI-PLC X domain-containing protein 74 349 - -
Lele55g1350 428 CDD PI-PLCc_At5g67130_like 76 349 - -
Lele55g1350 428 Gene3D Phosphatidylinositol (PI) phosphodiesterase 76 346 IPR017946 GO:0006629|GO:0008081
Lele55g1350 428 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 84 192 - -
Lele55g1350 428 PANTHER UNCHARACTERIZED 46 363 - -
Lele55g1350 428 SUPERFAMILY PLC-like phosphodiesterases 78 353 IPR017946 GO:0006629|GO:0008081
Lele55g1350 428 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1350 Lele-ChrLele55 19923447 19926956 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0299 50 1744524 1751336 Lele55g1350 55 19923447 19926956 CCT
Lele52g0308 52 1812195 1819129 Lele55g1350 55 19923447 19926956 CCT
Lele53g0139 53 1110280 1115550 Lele55g1350 55 19923447 19926956 hybridization
Lele54g0139 54 1176657 1180197 Lele55g1350 55 19923447 19926956 hybridization