Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1348 ATGTGGGATCTTAACGACTCGCCTGATCGGATAAACGACGACGGATCAGAAGGCTGTTCTTCACTCAATGATGATAAAGGAAAGCGGGTTGACGGATCTGTTTCCAATTCAAGTTCATCCGCGGTGGTCATGGAGGACGGATCCGCCGACGAAGACGGCGAGGCAAGCCGAGGAATATCGGACGGCAAAGATACCAACAACAAGACGAATATGAAGATGAAGATGAAGAAGAACAAAAAGAACAAGCGAAGCAGTAAGATATTCGGGTTCTGTGTGACCCATGAAGACTCATCCATGGATAGTGCTGAAGCTGAACTACCTGTAATAACCAGGCAGTTCATGCCGGTGGAGGACGCTGAAGACGTCGCCGGCGCCGGCGCTCGCTCATCCTTCCCTCGCTCTCACCGGGTAGGCCTAAAATTCAACCAATCAGAAGCAAACGGCGTCGGTGGCGTGAAATCAGTGGAAGTAGTGTCGTCGACGTCGTCGCAGCCGATGATTAAGAAAAGCCGGCGAGGGCCACGGTCGAGAAGCTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCGATTAAGTTCAGAGGGGCTGAGGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGAAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTCCCGAGAGGAAGCTCCAAATATAGAGGTGTCACTTTACACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGTCTATTTGACACCGAGATTGAAGCTGCTAGGGCTTATGACAAAGCAGCAATAAAGGGCAACGGCAAAGACGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTCATTCTGGTGAGCAACGAATTTTAGAGTCCTCGGGTAATAATAACGCTGATCATCACAATCTGGATTTAAGTCTGGGCAATACGATGAGCTCAAATAATAATCATAGTGCTAGGCAATCATTGGTGAATCTGTTACCAGAACAAGCTAATAGAAGTAACAACATGGAATCTCGTAGAAGAAATGGTGGGCACGGCGAGAGTGAAACGCTGCGTCTTCTGAGTCAAACGCATCTTCAATCTCCACCGGCTTCTGATGAAACCCCCCACAACAGCTATGGTCCCTACATGACTTCTGGACAACCTCAAATTCTTCACCGTTTCCCACATTTTCACCACCCAAATTATCGTATTTCTAGCAGCAGTAATGGAAACGCAGGGCGTTTGGGAAGTGATCTTTCATTGTCGATGAATGATGATCAAGAACAACGTTGGCAATCTGGGCATTCTCATCAATATATCTCGACTACTACTGCTGCAGCATCATCAGGATTCCCACAGCAGATCACAACTACCTCACAAGCTTGGCTGCAGACAAATGGGTTCCACAGTTCTCTCATGAGACCCTCCTCCTGA 1584 0.4766 MWDLNDSPDRINDDGSEGCSSLNDDKGKRVDGSVSNSSSSAVVMEDGSADEDGEASRGISDGKDTNNKTNMKMKMKKNKKNKRSSKIFGFCVTHEDSSMDSAEAELPVITRQFMPVEDAEDVAGAGARSSFPRSHRVGLKFNQSEANGVGGVKSVEVVSSTSSQPMIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKGNGKDAVTNFDPSIYENELHSGEQRILESSGNNNADHHNLDLSLGNTMSSNNNHSARQSLVNLLPEQANRSNNMESRRRNGGHGESETLRLLSQTHLQSPPASDETPHNSYGPYMTSGQPQILHRFPHFHHPNYRISSSSNGNAGRLGSDLSLSMNDDQEQRWQSGHSHQYISTTTAAASSGFPQQITTTSQAWLQTNGFHSSLMRPSS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1348 527 CDD AP2 180 237 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 MobiDBLite consensus disorder prediction 6 31 - -
Lele55g1348 527 MobiDBLite consensus disorder prediction 160 179 - -
Lele55g1348 527 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677
Lele55g1348 527 CDD AP2 271 331 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 ProSiteProfiles AP2/ERF domain profile. 180 236 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 MobiDBLite consensus disorder prediction 50 71 - -
Lele55g1348 527 SMART rav1_2 272 335 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 SMART rav1_2 180 242 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 ProSiteProfiles AP2/ERF domain profile. 272 329 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 MobiDBLite consensus disorder prediction 1 81 - -
Lele55g1348 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 421 - -
Lele55g1348 527 SUPERFAMILY DNA-binding domain 271 331 IPR016177 GO:0003677
Lele55g1348 527 MobiDBLite consensus disorder prediction 383 403 - -
Lele55g1348 527 Pfam AP2 domain 180 228 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 Pfam AP2 domain 271 319 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 PRINTS Ethylene responsive element binding protein signature 273 284 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700|GO:0006355
Lele55g1348 527 Gene3D AP2/ERF domain 179 238 IPR036955 GO:0003700|GO:0006355
Lele55g1348 527 Gene3D AP2/ERF domain 271 330 IPR036955 GO:0003700|GO:0006355
Lele55g1348 527 FunFam AP2-like ethylene-responsive transcription factor 179 238 - -
Lele55g1348 527 FunFam AP2-like ethylene-responsive transcription factor 271 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1348 Lele-ChrLele55 19886346 19888913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1348 1 526 AP2-EREBP Transcription Factor Family AT4G36920 49.436 5.04e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele55g1348 AP2 4.4e-10 CL0081