Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1340 ATGAAGAACACGAACAATTACACTAAACTCATCCTCCTTCATCCTTACATCCAGAAACAAGGAAGCTCCAATCGGATATGGCTTCTGGCTTTTATATCTTTCTTCACCTTAGCATTCCTTTGTACGTTAATTTACACTCGTGAATCATCTTCTTCTTCAATCACCAACGTTTCCAAAACCTCCATAGTTTCTTCTTCACATTCTTCTTCTTCTCTGACCACTGGTTCTGGGTTACCACTTACTGTAATAAACACACTTCTGCATTATGCTTCAAAGTCCAATGACACATACCATATGCCACACTCAGACCTCAAACCCATCTCTGATGTTCTTCGAAAATGTTCTTCGCCTTGCAACTTGCTCATCTTTGGCCTCACACACGAAACCCTTCTCTGGAAAGCACTGAATCACAATGGAAGAACCGTGTTTATCGATGAAAACCGCTATTACGCAGCTTACTACGAAGAACTATACCCTGAAATTGATGCCTACGATGTGCAGTACACAACCAAAAGGAGTGAAATGAAGGAGCTTCTAGTTTCAACGAAAGAACAGGTAACAAAGGAGTGCAAACCAGTTCAGAATTTGCTGTTCTCAGAATGTAAGCTTGGACTCAATGACCTTCCAAACCATGTGTATGAGTTGAGCTGGGATGTGATATTGGTAGACGGGCCACGCGGCGATTGGCCAGACGCGCCGGGAAGGATGGCGGCGATATTCACCGCCGGCGTGCTGGCTAGGAGCAAGAAAGGTGGGAATCCGAAGACGCATGTGTTTGTGCATGACTTTGGTGGAGAGGTGGAGAAGCTTTATGGGAATAAGTTTCTTTGTAAGCAGAATTTGGTGGAAGAAAGTGAGACTTTGGGGCATTACGTGGTTGAGAGGATGGATGCGAACAGTGTTCAGTATTGTAAGAATCAGTCTTCTTCTTCTTCATCATCATCATCAATGGCTTCTTCGTCTTCTTAA 969 0.4365 MKNTNNYTKLILLHPYIQKQGSSNRIWLLAFISFFTLAFLCTLIYTRESSSSSITNVSKTSIVSSSHSSSSLTTGSGLPLTVINTLLHYASKSNDTYHMPHSDLKPISDVLRKCSSPCNLLIFGLTHETLLWKALNHNGRTVFIDENRYYAAYYEELYPEIDAYDVQYTTKRSEMKELLVSTKEQVTKECKPVQNLLFSECKLGLNDLPNHVYELSWDVILVDGPRGDWPDAPGRMAAIFTAGVLARSKKGGNPKTHVFVHDFGGEVEKLYGNKFLCKQNLVEESETLGHYVVERMDANSVQYCKNQSSSSSSSSSMASSSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1340 322 Pfam Polysaccharide biosynthesis 104 290 IPR021148 -
Lele55g1340 322 PANTHER OS11G0490100 PROTEIN 12 305 IPR006514 GO:0045492
Lele55g1340 322 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 77 304 IPR006514 GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1340 Lele-ChrLele55 19834094 19835062 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0318 50 1853600 1855441 Lele55g1340 55 19834094 19835062 CCT
Lele51g0312 51 1785612 1786993 Lele55g1340 55 19834094 19835062 CCT
Lele52g0328 52 1932011 1933361 Lele55g1340 55 19834094 19835062 CCT
Lele49g0302 49 1780236 1783428 Lele55g1340 55 19834094 19835062 CCT
Lele53g0146 53 1199051 1200025 Lele55g1340 55 19834094 19835062 hybridization
Lele54g0147 54 1260298 1261275 Lele55g1340 55 19834094 19835062 hybridization