Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1331 ATGCAAGATTTTAGTTTTACTGAAGTAAGGCGAACATATGCTTCCGTGAAGAAGTTTGTGTATACGCAACGAGATCGAAGTAAACTTTACCCCCTGAAAGAACATGGAAATACCAAGATCAAGGATAATCATGAGGTGGGGAACAGGCGCGCTGGAAAGTGGAGGTTTCTGAATTGTGATATTGGAAGTAGAAATATGGGGCTTCTTCTGCATTGCAAAGAATCTGAGACGGCGGCCTTCCTCTCCGTCCCTTACCTTCCATTGCTGGTCGCTACTCCATCTGGTCCTTCCTCTTCTAGTGTTCTTCATTGGCGTCGACGCGTCGTTTTCTTCACTCTAACACCTGCTAGTTGCCGGTCTCTTAACTTGTTCATCCTCTTCCATAAGGTGTATCTATCTAGCTGGCCTCGGCCTTGGAACTTTGAAGAACTTACAATGGAGGAGAAGTTAGACGTTGCAGACAAAAAGGTGCTGGTTGATATAGTAAAATTGGTACAAAAAAGAGGAATGCAGGGTGCGCTGGGAGACTGGAAAAACTTCTTAATCAGTCATGATAAAAAGTTCGGGGCTAATTTGAGTGATCCAGCAAAGAGGTCCCATGAGACATTGGTTGCATTTCTAAAGACGTTTTCAAAGCAGGATGATTTAAAGTTTATTGATACCATCTTGCGACGCCATTCTAATCAAGACTTATTTGAGCTATTCAATGATAAGTCTCATCACATCCCTGAGCAGAGACTTGTCCAGAACACTTTGCAGCACCCGTGGTATCCATTGGATTATACATTTGGAGTACTTGATGAGGACTGGGTGGTTATAAACCTTAAGAAAAAAAACAGGTTGCTGAAATTTACCAAGATGGTGGCTATTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCAGTAGTGAGTGTCTGTGTGGTTGACCGTGATTTGAAGGTTAAACTAAAAAAACTTGTAAACCCAAACAAAGCAATTGCTGACTACAGATCAGAGATTACTGGTGTATATCCTCAGGATCTCGAAGGTGTTACTTGCTCATTGGCTAATATACAGAAATCCTTGCATAAGATGTTAATGGATGGAACAATATTAGTGGGACATAGTTTGCATAATGATCTACGTGCGCTGAAGCTAGATTATGTTAGAGTGATTGACACTTCATATATCTTCCAATACTCAGATGGTAATATTCACAGGAGACCTTCTTTGAATGCTTTATGTAAGGCCGTGTTAGGTTATGAACTTCGGAAAACAGGTGCTCCACATAATTGTCTTGATGATGCGATGGCGGCAATGAAACTTGTTCTTGCTAAGATAGAGCGTGGTGTCGATAATGCAATTCCCTTGGCTCAAGAGCCTGTTCCTGAAAGCGAAATGGCTAAGCTTCTTCTTCACAGGATATCATCTGGGGTTAATAGTGAAGAACTGTATAGAGTTGTTCCTGGGGATTTCAATTTAGAACTGAGGCCGCCTAAAGGGGAAAAATATTCTGCCTTTGCCATCTTCAAGAATCCACAAGAGGCTCACGAGGCCTTTGAAAGTCTCAAAGGCGACCTAGAAAAGGATTCAGCTGGACGTCGACAGAAGCTTGTCAAATTCCGGCTCAGTACATGTGGGAAGACCGTTATATGTGTTCGGAAAATGTCACCTGATAGGCCCAATTACTCCAAGAGAGCATTAGAAGCGGACGAAACAACAGTGTCGAAGAAAGCAAAGATGGATCCTGAAACTGAAGGGAATGCCACGACCATCTCTACCGAGTGTGACACCCACTTGAATGAGATTGAAGCATTAAATCAACGGCTGAAAGAAAATGATTCGGAAATTGAATCGCTGAAGCAACAGTTGAAACAAAAGGATTACGAAATCTCCATATTGAATAAAATGGTATCCTCCTTGAACAAGAAATTAAGGAAATGA 1929 0.4194 MQDFSFTEVRRTYASVKKFVYTQRDRSKLYPLKEHGNTKIKDNHEVGNRRAGKWRFLNCDIGSRNMGLLLHCKESETAAFLSVPYLPLLVATPSGPSSSSVLHWRRRVVFFTLTPASCRSLNLFILFHKVYLSSWPRPWNFEELTMEEKLDVADKKVLVDIVKLVQKRGMQGALGDWKNFLISHDKKFGANLSDPAKRSHETLVAFLKTFSKQDDLKFIDTILRRHSNQDLFELFNDKSHHIPEQRLVQNTLQHPWYPLDYTFGVLDEDWVVINLKKKNRLLKFTKMVAIDCEMVLCEDGTEAVVSVCVVDRDLKVKLKKLVNPNKAIADYRSEITGVYPQDLEGVTCSLANIQKSLHKMLMDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYSDGNIHRRPSLNALCKAVLGYELRKTGAPHNCLDDAMAAMKLVLAKIERGVDNAIPLAQEPVPESEMAKLLLHRISSGVNSEELYRVVPGDFNLELRPPKGEKYSAFAIFKNPQEAHEAFESLKGDLEKDSAGRRQKLVKFRLSTCGKTVICVRKMSPDRPNYSKRALEADETTVSKKAKMDPETEGNATTISTECDTHLNEIEALNQRLKENDSEIESLKQQLKQKDYEISILNKMVSSLNKKLRK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1331 642 Gene3D - 283 451 IPR036397 GO:0003676
Lele55g1331 642 Pfam Exonuclease 288 437 IPR013520 -
Lele55g1331 642 SUPERFAMILY Ribonuclease H-like 287 442 IPR012337 -
Lele55g1331 642 CDD REX1_like 288 439 IPR034922 -
Lele55g1331 642 FunFam Small RNA degrading nuclease 3 282 456 - -
Lele55g1331 642 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 155 456 - -
Lele55g1331 642 Coils Coil 591 632 - -
Lele55g1331 642 SMART exoiiiendus 286 447 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1331 Lele-ChrLele55 19791479 19799675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1331 286 437 C2H2 Transcription Factor Family AT2G48100 34.756 3.33e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0153 53 1221440 1228728 Lele55g1331 55 19791479 19799675 hybridization
Lele54g0153 54 1293756 1301984 Lele55g1331 55 19791479 19799675 hybridization