Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1319 ATGGCTTATTATGATCCTGCTAATTGTGAGAACGACGCGCAGGCTCTGCAATTCATAGAAGACGTTTCCAGAGACGCCGCTTCCGTCCAGAGGAGAGTTCTGGGGGAGATTCTCACCCAAAACGCCGACACCGAATACCTTAAACGGTTTCAGCTCAACGGAGCCACCGACCTTGAAACCTTCAAATCCAAGGTTCCTGTCGTAACTTACGAGAATCTGCGGCCCGAAGTCCAACGCATTGTCAGTGGTGATCGCTCCCCCATCTTCTCCTCTCATCCAATCTCTGAGTTCCTCACCAGTTCTGGAACATCTGGTGGGGAGAGAAAACTGATGCCAACGATTGCCGAAGAGATGGATCGTCGTCACCTATTGTTCAGCCTTCTCATGCCCCTGATAAAACAACATGTGCGAGATTTGGACAACTGGAAGGCGCTTCGGTTTCTGTTTATAAAGGCAGAGACGAAGACTCCAGGCGGAATAGTGGCACGACCAGCTAGTACAAGCTATTACACAAGCGAGCAATTCAAGAAGAGACCATTTGAATCGTACACAAGCCCCAACCAAGTCATAGAATGTACCGATTCTTTTCAGAGCATGTACACCCAGATGTTATGTGGTCTCATCATGAGACACGAAGTTCAACGTGTCGGAGCCATTTTCGCATCTGGGTTCCTTAGAGCTCTCAAATTCCTTCAGAATAACTACCAACAGTTAGCCAACGACATCTCCACTGGGACTCTAAGCCCACAAATCACAGACGCTTCAATCAGAAAATGCCTTGGTAACATCTTGAATAAACCAGACCCTGAGCTCGCAGATTTCATCATCCGAGAATGTTCCAAGGAGAACTGGGAACGGATAATTACGAGGATTTGGCCTAACGCTAAATACGTTGACGTTATTGTCACCGGTGCTATGGCTCAGTACATCCCAACGCTTGATTATTACAGTGGTGGCCTACCTCTTGTTTGTACCATGTACGCTTCTTCTGAATGCTTCTTTGGACCAAACCTCAGGCCGTTTTGCGACCCATCTGAAGTTTCCTACATGATCTTGCCAAACATGGGATACTTCGAGTTCTTGCCCATTGACGAAGGATCATCATCTTCTGATCCGGTGGATCTAACCGACGTTGAAGTTGGGAAGGAATACGAATTGGTTATCACCACTTACGCCGGTCTATGCCGGTACCGAGTCGGCGATGTTCTCCGAGCCACGGGGTTCCATAACTCGGCGCCGGAATTTCAGTTCGTGGGGAGAAGGAACGTTTTGTTGAGCATTGACTTGGACAAAACAGACGAGGCCGAGTTGCAAAAAGCCGTTGACAATGCCTCGTTGCTTCTAAAGGAGTTCAACACTAGCGTAGTGGAGTATACAAGCTACGCCGACACTAAATCCTTGCCTGGACATTACGTGATTTACTGGGAACTGCTATCGAAGAACGACGACCCGTCGGTTCGGCCCACGGGTGAAGTCTTGAAACGGTGCTGTCTCGCCATGGAGGAGTCGCTGAACGCTATGTACAGACAAGGAAGAGTCGCCGACCGGTCGATTGGACCGTTGGAGATAAGAGTGGTGAAGAACGGTACGTTTGAAGAGCTTATGGATTACGCGATCTCCAGAGGCGCATCCATTAGTCAGTACAAAGCGCCGAGGTGTGTGAGTTCAACGCCGATTCTGGAACTGCTTGACTCGAGAGTGGTTTCAGTTCACTTCAGTCCATCTGCACCGCACTGGACGCCGGTGGGAGGTCGTTGCCGATTGGATTGA 1770 0.4932 MAYYDPANCENDAQALQFIEDVSRDAASVQRRVLGEILTQNADTEYLKRFQLNGATDLETFKSKVPVVTYENLRPEVQRIVSGDRSPIFSSHPISEFLTSSGTSGGERKLMPTIAEEMDRRHLLFSLLMPLIKQHVRDLDNWKALRFLFIKAETKTPGGIVARPASTSYYTSEQFKKRPFESYTSPNQVIECTDSFQSMYTQMLCGLIMRHEVQRVGAIFASGFLRALKFLQNNYQQLANDISTGTLSPQITDASIRKCLGNILNKPDPELADFIIRECSKENWERIITRIWPNAKYVDVIVTGAMAQYIPTLDYYSGGLPLVCTMYASSECFFGPNLRPFCDPSEVSYMILPNMGYFEFLPIDEGSSSSDPVDLTDVEVGKEYELVITTYAGLCRYRVGDVLRATGFHNSAPEFQFVGRRNVLLSIDLDKTDEAELQKAVDNASLLLKEFNTSVVEYTSYADTKSLPGHYVIYWELLSKNDDPSVRPTGEVLKRCCLAMEESLNAMYRQGRVADRSIGPLEIRVVKNGTFEELMDYAISRGASISQYKAPRCVSSTPILELLDSRVVSVHFSPSAPHWTPVGGRCRLD 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1319 589 Pfam GH3 auxin-responsive promoter 19 556 IPR004993 -
Lele55g1319 589 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 13 576 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1319 Lele-ChrLele55 19630028 19631973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1319 10 573 EF-hand Containing Proteins AT1G23160 48.427 0.0 574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0338 51 1936339 1939062 Lele55g1319 55 19630028 19631973 CCT
Lele49g0324 49 1911046 1913104 Lele55g1319 55 19630028 19631973 CCT
Lele54g0165 54 1413009 1414972 Lele55g1319 55 19630028 19631973 hybridization