Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1317 ATGGCTACCCAGGACCAACCACTCCTACCTGGCTTACGCCAGGATGAGGAGCAGGAAACCGCCTATGATTCGTCGGAGAAGATCGTGGTCGTCGGGGTTGACGACGCCGACCCCGATACTTTCGGTCGGGTGCCGCCGTTCTCATGGAAGAAGCTCTGGCTCTTCACTGGCCCTGGCTTTCTCATGAGCATCGCGTTTCTTGATCCTGGGAATTTGGAGGGTGATCTTCAAGCTGGTGCTATTGCTGGCTACTCACTTCTATGGCTCCTCATGTGGGCGACGGCTATGGGGCTTCTCGTTCAGCTCCTGTCAGCTAGGCTCGGCGTCGCCACCGGAAGGCACTTGGCTGAGCTCTGCAGAGAGGAGTACCCCCCGTGGGCCAGGATGTTGCTCTGGTTTATGGCGGAATTAGCTCTAATTGGGGCTGACATTCAAGAGGTTATTGGAAGCGCTATTGCTATTAGGATTCTGAGTAACGGATTTCTGCCTCTTTGGGCTGGGGTCGTCATCACAGCTTTTGATTGTTTTATTTTTCTGTTTCTGGAGAACTATGGTGTGAGGAAACTGGAAGCACTTTTTGCGGTTCTCATTGGTATAATGGCGCTTTCATTTGCGTGGATGTTTGGCGAAGCAAAACCCGATGGCTTAGATATACTCCTAGGTCTTTTGGTTCCAAAACTTAGTTCCAAAACAATACAGCAGGCTGTTGCAGTTGTTGGTTGCATTATCATGCCTCACAATGTATTCTTGCACTCTGCTCTTGTTCAATCGAGGCAGATTGACTCAAGCAAGGAAGGACGAGTTCAAGAAGCTCTTAATTACTATACTATTGAATCCGCTGCTGCACTTGCGGTCTCCTTAGTCATCAACATATTTGTCACAACTGTGTTTGCCAAGGGTTTCTATGGTACTGAAATAGCAAATACCATTGGTCTCGAAAATGCAGGGCAGTATCTTCAGCAGAAGTATGGTGGTGGACTTTTTCCAATCTTATATATATGGGCTATTGGGTTATTAGCAGCTGGCCAAAGTAGCACCATTACTGGCACTTATGCGGGACAATTTATTATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAATGGGTTAGGGCTTTAATTACACGAAGTTTTGCTATCATCCCAACCATGATTGTTGCTCTTGTCTTTAATACCTCCGAGGACTCATTAGATGTCCTAAACGAATGGCTCAATATTCTTCAGTCAGTTCAAATCCCTTTCGCTCTTATTCCCTTGCTTTGCTTGGTGTCAAAGGAGCAGCTGATGGGGACTTTCAGGATTGGCATTGTCCTCAGGATTATTTCCTGGTTTGTGGCTGCTTTAGTGATAGTCATTAACGGCTATCTGTTGGTGGAATTCTTCTCATCTGAAGTGAATGGAGCAGTGATTACCACTATAGTGTCTGCAGTTACAGTCATGTATGTTGCATTCATAATCTACCTCGCTTTACGAATGATCAACTTCTCGCCGTGGCAAAGATTTTCACAAACCAACGCAAACACTAACACTGAATTGACTAGTTGA 1542 0.4611 MATQDQPLLPGLRQDEEQETAYDSSEKIVVVGVDDADPDTFGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCREEYPPWARMLLWFMAELALIGADIQEVIGSAIAIRILSNGFLPLWAGVVITAFDCFIFLFLENYGVRKLEALFAVLIGIMALSFAWMFGEAKPDGLDILLGLLVPKLSSKTIQQAVAVVGCIIMPHNVFLHSALVQSRQIDSSKEGRVQEALNYYTIESAAALAVSLVINIFVTTVFAKGFYGTEIANTIGLENAGQYLQQKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALVFNTSEDSLDVLNEWLNILQSVQIPFALIPLLCLVSKEQLMGTFRIGIVLRIISWFVAALVIVINGYLLVEFFSSEVNGAVITTIVSAVTVMYVAFIIYLALRMINFSPWQRFSQTNANTNTELTS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PRINTS Natural resistance-associated macrophage protein signature 131 157 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 492 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 Hamap Divalent metal cation transporter MntH [mntH]. 38 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 50 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele55g1317 513 MobiDBLite consensus disorder prediction 1 20 - -
Lele55g1317 513 Pfam Natural resistance-associated macrophage protein 73 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1317 Lele-ChrLele55 19612602 19615264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1317 42 497 Inorganic Solute Cotransporters AT2G23150 80.044 0.0 756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0343 50 1978306 1982916 Lele55g1317 55 19612602 19615264 CCT
Lele51g0339 51 1940149 1945057 Lele55g1317 55 19612602 19615264 CCT
Lele52g0350 52 2063062 2067736 Lele55g1317 55 19612602 19615264 CCT
Lele49g0325 49 1921308 1924029 Lele55g1317 55 19612602 19615264 CCT
Lele53g0166 53 1385059 1387746 Lele55g1317 55 19612602 19615264 hybridization
Lele54g0167 54 1439657 1443733 Lele55g1317 55 19612602 19615264 hybridization