Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1312 ATGATTATGGGAGACAATGTTGTGCCACCCAGTGCCTTGCTGGATTCGTCCATAGATTTTGATTACATGGATGAACTTTTCTCAGATGGATGCTGGTTGGAAACCGCTACAGATGGATCTAATTTTTTGCTGGGTTGCCCTTCTGTGTCCAATCCCCTCCTCGATTCATCATTTTCATGGCCTGCCTTGGACGCTAATGTGCACGTGAATCTAGAACAAAGGCAGAGTCAATTGATTGATGACTACCAGGAAACACAAACCAATACTCAATCGGATGGCAAGGACAAGGACATAATAGATGTTGCTGGGACGTGTAATGCTTCTGAAATTCGTTCAGTTGAGAGTTCAGAAGTCGTTAGGAGGTGGGGGATTAGACCTATGGCTAATCCGAGCCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACAAAGATATGCTTTTACAAATATGGGTGCCGGTTAATAGAGAGGGTGGGAGGATTTTAACCACTTGTGATCTTCCCTTCTCGCTTGAAAGCAGCAGTCCAAATCTTGCCAAGTATCGAGAAATCTCTGCCAAATATCATTTTTCAGCTGAGGGGCATTCTAGGGAGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAACGAGAAGGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAATGATGAGTACCCTCGAGTTGACTATGCTCACGAGTATGATGTGCGTGGATCTTTAGCACTTCCAATCTTTGAGAAATGTAGCAACATTTGCTTGGGTGTTATTGAGGTTGTCATGACAGCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGAGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATTTCGAGTACACAGAATGTGAAGGCATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCTAAAGGTGTTGAGATCAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTTCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGATAATTATCTACACTGTGTATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAAGCTTTTATGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCATAACAGCACAGATGACTTTGTACTCGAGTTCTTCTTGCCTGTAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAGGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAGGAAACCAGCCTATCAATTGATGAAGTGACAGTCACTGCAGAGACTAGATCTGCTAGAATGGAGTTCCAACAATGCAGGAATGTTGCTTCGCATGGCACCAAAGAAAAGTCAAATGAAACTTCGACTAGGCAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTATGGTTGGGAGTGTTCTTCTTTTGGTGACGGTGGCTCACCGATTGCAGGTTTAAGTAAAACGGGAGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAGGTTCTTCGGCAACATTTTGCAGGAAGCCTCAAAGATGCGGCGAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTCGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCTTCCAAATCCATCAAGCTCAAGGCCTGATACTAGCTTGCTGAGCCCAGAAGCGCCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCTAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCCGGTGGAAAAGTTCCTAGGTGCAGAGAGGATTCTGCTAATGAGGTTATGAAGAGGATTCCAAGTGAAGTAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGAACATCCAAAAACTGAGTTCAAAAGCAGTCATAAAGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAGTTGGCGTTATGAAGATCTTTTGTGGGAAATTACTTGGCGATTCAACATAGATGACATGTGCAAATACGATATCAAGTATCTGGACGATGACTCTGACTGGGTTTTGCTCACTTGCGATGCTGATTTGGAGGAGTGCATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTGGATAGTAAATCATAGCTACTCATTACTGTAAATATTCAATTCTATGTCTCGTTTGGTTCACGGTATCAAGGTGTACGGAATCGATATCATGGCCATCTGCGGTTTATCTCCTTCCTCCTTTTCCAGTGGAGTGGCCTGGTTGAGGAAGCACCTCCTGCAGTACAGTGGAGACACCACGCACCCTCTCATCCTCCGATTTGGCTTCTCTCCATATCTGATGCTCATCCTCCAACTCAGGTTCTCTCCATTTGCAATGCTCGTACTCAGATTTGGCTTCTCTCCATTTGTGATGGCACCATTGATATGGTCTCCTTCCAAACTTGGATGAATGGCTTGCAATTTGCAATTGAGGAAGTGTCTGCTATAGGACTCAATTTATCTTCTTACTTAATGGAGCTTATGGAATCAAATGAGGTTTCAGAAAATGCAAAAATGGACGTTTAG 3069 0.4324 MIMGDNVVPPSALLDSSIDFDYMDELFSDGCWLETATDGSNFLLGCPSVSNPLLDSSFSWPALDANVHVNLEQRQSQLIDDYQETQTNTQSDGKDKDIIDVAGTCNASEIRSVESSEVVRRWGIRPMANPSPECSVLERLIKALVYIRDFNRDKDMLLQIWVPVNREGGRILTTCDLPFSLESSSPNLAKYREISAKYHFSAEGHSRELVPGLPGRVFNEKVPEWTPDVRFFRNDEYPRVDYAHEYDVRGSLALPIFEKCSNICLGVIEVVMTAQKIKYFPELESVCKALQAVDLRSKNISSTQNVKACNNSYEAALPEILKVLRSACEMHKLPLAQTWVSCIKQGKEGCRHTDDNYLHCVSPVEHACYVGDPCVQAFHEACSEHHLLKGQGVTGEAFMTNQPCFSTDVTSFSKIDYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCHSLRVITNKELEEETSLSIDEVTVTAETRSARMEFQQCRNVASHGTKEKSNETSTRQVSNLSQQEDSILKGNLDYGWECSSFGDGGSPIAGLSKTGDKRRTKAEKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDLPNPSSSRPDTSLLSPEAPSSSCNQSSSSSHSSSNMSELQLHAQNVAGGKVPRCREDSANEVMKRIPSEVGLKSLSQDTAELLPTSQSQETPCEHPKTEFKSSHKAHKKEDTHRVKVTFREEKTRFRMPKSWRYEDLLWEITWRFNIDDMCKYDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLDSKSXLLITVNIQFYVSFGSRYQGVRNRYHGHLRFISFLLFQWSGLVEEAPPAVQWRHHAPSHPPIWLLSISDAHPPTQVLSICNARTQIWLLSICDGTIDMVSFQTWMNGLQFAIEEVSAIGLNLSSYLMELMESNEVSENAKMDV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1312 1022 MobiDBLite consensus disorder prediction 519 538 - -
Lele55g1312 1022 CDD PB1_NLP 795 874 IPR034891 -
Lele55g1312 1022 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Lele55g1312 1022 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Lele55g1312 1022 MobiDBLite consensus disorder prediction 754 775 - -
Lele55g1312 1022 SMART PB1_new 794 877 IPR000270 GO:0005515
Lele55g1312 1022 Pfam RWP-RK domain 583 631 IPR003035 -
Lele55g1312 1022 Pfam PB1 domain 794 874 IPR000270 GO:0005515
Lele55g1312 1022 MobiDBLite consensus disorder prediction 669 724 - -
Lele55g1312 1022 SUPERFAMILY CAD & PB1 domains 784 878 - -
Lele55g1312 1022 Gene3D - 795 877 - -
Lele55g1312 1022 PANTHER PROTEIN NLP8 101 876 IPR045012 GO:0003700
Lele55g1312 1022 MobiDBLite consensus disorder prediction 669 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1312 Lele-ChrLele55 19562314 19566756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1312 18 874 NLP Transcription Factor Family AT1G20640 49.596 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele55g1312 PB1 1.5e-19 CL0072