Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1300 ATGGCGCAATTCACACCAACACTACCACCTTTGCACCAAATCACACCCCTTTCGAACTCCATCGGCAACAACAACAACATTCGAGTTCCTAGGACGACTAATTTATTGCCGAAGTTCCAACAATCGAAGGCATTAGGAAGCTTGGGTGATGCTAATTGCATGGAACAGTTGCTTATTCACTGTGCCGATGCCATCGAAGCCAATGACGTCACTCTCGCCCAACAAATCCTATGGGTTCTCAACAACATCGCGCCTCCCGACGGCGACTCCAATCAGCGTCTCGCCGCCTCATTCCTGCGTGCCCTTACCGCACGCGCCGCCAAATCTGGAAGCTCCAAAATGTTAGCCGCCGTCGCAAGCGCCCACAAGAACACCTGCTGTCTCGCCATTCAAACCCACCGCTTCTCCGTCATCGAGCTAGCCAACTTCGTCGACGTCACCCCCTGGCATCGCTTCGGTTTCACGGCAGCTAATTCAGCCATTCTAGAAGCCACGGAAGGTTTCTCCACCATCCACATCGTTGACCTAAGCTCAACACACTGCATGCAGATTCCCACCCTAATCGACGCCATCGCTTCCCGCCACGACGTCCCTCCTCTGATCAAACTCACAGTAGTAGGTTCTTCTAGAAACATCCCACCCATGCTTGACCTTTCCTACGACGAACTCGGTTCAAAGCTGGTAAATTTCGCAAAGTCTAGAAACGTCATGATGGATTTCAGAGTGATTTCTTCAACTCACGCAGATGGGTTCGTCGCTTTGGTCCAATACCTTGGGTTGCACCAACGTTTCGTGACGGAAGCTCTGGTGATAAACTGCCACATGATGCTTCATTGTATTCCAGACGAAACCCTATCTGATGCTACTTCTTCTCCTTCATCGCTGAGATCACTGTTTCTGAAGGCGCTGAGGAGTTTGAACCCAACGCTTGTCGTTTTGGTGGAGGAGGACGTGGATTGGACATGGAGTGATTTGGTGTGCAGGATGAGGGCTGCGTTTAACTATATGTGGATACCGTACGACACGGTGGACACGTTCGTTCGACGAGGAAGCAAGCAAAGGCAATGGTACGAAGCGGATATGTGTTGGAAGATACAGAATGTGATAGCGCATGAAGGTGTTGAGAGGGTAGAGAGGCTTGAGAGTAAGAGCAGGTGGGAGCAGCGAATGAGAGATGCTGAGTTTCAGGGAATTAGCTTCAGTGACGACGCCGTTTCGGAGGTGAAGGCCATACTGGAGGAACATGCAGCTGCGTGGGGGTTCAAGAAGGAAGACCAACATCTTTTGCTTACGTGGAAAGGACATAATGTCGTTTTCGCCTCTGCTTGGTTTCCTGCTTGA 1341 0.5086 MAQFTPTLPPLHQITPLSNSIGNNNNIRVPRTTNLLPKFQQSKALGSLGDANCMEQLLIHCADAIEANDVTLAQQILWVLNNIAPPDGDSNQRLAASFLRALTARAAKSGSSKMLAAVASAHKNTCCLAIQTHRFSVIELANFVDVTPWHRFGFTAANSAILEATEGFSTIHIVDLSSTHCMQIPTLIDAIASRHDVPPLIKLTVVGSSRNIPPMLDLSYDELGSKLVNFAKSRNVMMDFRVISSTHADGFVALVQYLGLHQRFVTEALVINCHMMLHCIPDETLSDATSSPSSLRSLFLKALRSLNPTLVVLVEEDVDWTWSDLVCRMRAAFNYMWIPYDTVDTFVRRGSKQRQWYEADMCWKIQNVIAHEGVERVERLESKSRWEQRMRDAEFQGISFSDDAVSEVKAILEEHAAAWGFKKEDQHLLLTWKGHNVVFASAWFPA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1300 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 434 IPR005202 -
Lele55g1300 446 Pfam GRAS domain family 54 443 IPR005202 -
Lele55g1300 446 ProSiteProfiles GRAS family profile. 45 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1300 Lele-ChrLele55 19461140 19462480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1300 38 445 GRAS Transcription Factor Family AT3G49950 60.584 5.51e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele55g1300 GRAS 2.4e-93 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0185 53 1541908 1543248 Lele55g1300 55 19461140 19462480 hybridization
Lele54g0188 54 1603034 1604215 Lele55g1300 55 19461140 19462480 hybridization