Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1299 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGATGCAGTGAGAACTGTATATTGCGACCTTGCTTGCAGTGGATCGATGGTCCTCAAGCCCAAGGTCACGCAACTCTGTTCGTCGCTAAGTTCTTTGGCCGTGCCGGCCTGATGTCTTTCATTTCTAACGTCCCTCCCAACCAGAGACCTGCTCTGTTTCAGTCCTTGTTGTTCGAAGCGTGTGGGCGAACGGTGAACCCTGTGAACGGAGCTGTTGGGCTTCTGTGGACAGGAAACTGGCATGTGTGCCAGGCGGCCGTGGAGTCGGTGCTGCGCGGTGGCACTTTGAAGCCCATGCCAGAGCTTCTAGGCTTGGATGCTCTGGCTCCGGTTCCGGCTACGGATGAGGCATCCGAAGCAGAGGTTACGTGCAATGACATGCGGAGGATCCGAGATCCGAACTCGAATTTGCGGTATAATAACAAGGTCTCTCCCGGCGGCAAAATCAGACTGTCTGATGACTCTACCATGCTCCAGACGACCGATCTCGACCTCCGATTGACGCCAAACTTCCTCCATAAAGTGCCTGTCTACGGCTGCGGACCAGAAGTCCGACGGCCGGGTTCGCCGTCGATGAACTCGGAAGAATCCGTCGTGACGGCGACTTGTTTGGAAAGCGGGATTGGAGATCGCCACGCTCACGGCCGAGACCCGAAACTTCTCAACCTTTTCATTTGA 711 0.5541 MSCNGCRVLRKGCSENCILRPCLQWIDGPQAQGHATLFVAKFFGRAGLMSFISNVPPNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVESVLRGGTLKPMPELLGLDALAPVPATDEASEAEVTCNDMRRIRDPNSNLRYNNKVSPGGKIRLSDDSTMLQTTDLDLRLTPNFLHKVPVYGCGPEVRRPGSPSMNSEESVVTATCLESGIGDRHAHGRDPKLLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1299 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 217 - -
Lele55g1299 236 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lele55g1299 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1299 Lele-ChrLele55 19448258 19449104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1299 1 235 AS2 family AT3G49940 55.294 4.35e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele55g1299 LOB 1.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1299 55 19448258 19449104 Lele49g0341 49 2000892 2001623 CCT
Lele55g1299 55 19448258 19449104 Lele50g0360 50 2060344 2061083 CCT
Lele55g1299 55 19448258 19449104 Lele51g0355 51 2019401 2020133 CCT
Lele55g1299 55 19448258 19449104 Lele52g0366 52 2142099 2142841 CCT
Lele53g0186 53 1555486 1556330 Lele55g1299 55 19448258 19449104 hybridization
Lele54g0190 54 1623032 1625330 Lele55g1299 55 19448258 19449104 hybridization