Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1298 ATGCGTCGCACCAATCAGGTATTTCTCTTCCGTGTGCAGCCAAGTGATTACACAGTACCTGAAGAAGTTAAAGAAGCAGGCTTTCAGATCTGTGCGGATGAATTGGAATCTTTTGTTGAAAGACACGAAGTAAAGAAGCTAAAATTTCATGGTGGGGTTGATGGAATTTCAAAAAAGCTTTCAACATCAACGGAAGATGGTATTGACAATGACTCCGACCAACTTATCAAGAGACAAGAAATCTACGGAATCAACAAATTCACCGAGAGCGAAGTCCGAAGTTTCTGGGTTTTTGTCTTCGAAGCACTTCAAGACATGACGCTAATGATCCTAGGCGTGTGTGCTATTGTGTCTCTCGTAATAGGAATAGCGACAGAAGGGTGGCCCGGAGGAGCTCACGATGGACTAGGAATCGTCGTAAGTATCGTGTTTGTGACAGCAACAAGAGATCAAGTCCCCACAGATGGACTCTTCGTTTCAGGATTCTCCTTGTCGATCGATGAATCAAGTTTAACCGGAGAAAGGGAACCGGTAATGGTGAATTCTCCGAACCCATTTCTTCTATCTGGAACCAAGGTTCAAGATGGATCCGGCAAGATAAAAGGCAGAAGGAAGCATGAGATTCTAGCGACGCCAACAGAAGCTGCAATATTGGAATATGGTTTATCACTGGGAGGGGATTTTCATAAAGAGAGAAAAGCATGTAAGATTGTGAAAGTTGAGCCATTTAACTCAGAAAAGAAAAGGATGGGTGTAGTTTTAGAGCTGCCTGAAGGAAATCTTGCTTCTGAGATCGTTTTGGCTGCTTGTGACAAAGGGATTAATTCAAACGGAGATGAAAATAGATTCTCTGCTGAAGATTCTATTCCTACTTCTGGATATACTTGTATTGGGATCGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCCGTTGCAACATGTCGAAAAGCGGGTATTACAGTTAGAATGGTTACAGGTGATAATATTAATACTGCTAAAGCTATAGCCATAGAATGTGGGATTTTAACAGACGATGGCATAGACATAGAAGGCCCTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTGA 1101 0.4223 MRRTNQVFLFRVQPSDYTVPEEVKEAGFQICADELESFVERHEVKKLKFHGGVDGISKKLSTSTEDGIDNDSDQLIKRQEIYGINKFTESEVRSFWVFVFEALQDMTLMILGVCAIVSLVIGIATEGWPGGAHDGLGIVVSIVFVTATRDQVPTDGLFVSGFSLSIDESSLTGEREPVMVNSPNPFLLSGTKVQDGSGKIKGRRKHEILATPTEAAILEYGLSLGGDFHKERKACKIVKVEPFNSEKKRMGVVLELPEGNLASEIVLAACDKGINSNGDENRFSAEDSIPTSGYTCIGIVGIKDPVRPGVKESVATCRKAGITVRMVTGDNINTAKAIAIECGILTDDGIDIEGPSERRLRRKCLN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1298 366 SMART Cation_ATPase_N_a_2 49 123 IPR004014 -
Lele55g1298 366 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 204 310 IPR023299 GO:0000166
Lele55g1298 366 Gene3D - 286 364 IPR023214 -
Lele55g1298 366 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 233 346 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele55g1298 366 Pfam haloacid dehalogenase-like hydrolase 297 359 - -
Lele55g1298 366 Pfam Cation transport ATPase (P-type) 204 270 - -
Lele55g1298 366 PANTHER CATION TRANSPORTING ATPASE 27 147 - -
Lele55g1298 366 SUPERFAMILY Calcium ATPase, transduction domain A 147 200 IPR008250 -
Lele55g1298 366 Gene3D - 201 285 IPR023299 GO:0000166
Lele55g1298 366 Pfam E1-E2 ATPase 142 201 - -
Lele55g1298 366 Pfam Cation transporter/ATPase, N-terminus 50 118 IPR004014 -
Lele55g1298 366 FunFam copper-transporting ATPase 1 isoform X2 300 345 - -
Lele55g1298 366 Gene3D - 137 200 - -
Lele55g1298 366 SUPERFAMILY HAD-like 294 346 IPR036412 -
Lele55g1298 366 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 146 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1298 Lele-ChrLele55 19435058 19437449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1298 205 358 Primary Pumps ATPases AT4G37640 61.026 6.13e-65 220