Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1292 ATGGGAGAAGAGTACGGCAGGATAGTGGTACTGAGAGAATTCGACCCAGATAAAGACAGAGACAGAGTAGAAGCAGTAGAAAGAATATGTGAAGTTGGACCCAGTGGGAAGCTTTCCCTCTTCACCGACCTCCTCGGTGACCCAATTTGCAGGGTCCGCCACTCCCCTGCTTTCCGCATGCTGGTGGCGGTGGTAGGCGAAGAGATTGTGGGAATTATAAGAGGTTGCATCAAAACCGTCACATGCGGAAAGAAGCTCTCCAGAAATGGAAACTTCACTGAACCCCTCCCTGTATACACCAAGCTCGCCTATATCTTAGGTCTTCGCGTTTCTCCTTCTTACCGGAGAATGGGAATAGGGTTGAAGCTGGTGAAGACAATGGAGCAATGGTTCAGAGATAATGGAGCTGAATACTCGTACATGGCGACAGAAAAGGACAATTTCGCGTCCGTTATGCTCTTCACCGACAAATGCGGATACAACAAGTTCCGTACACCGTCGATTCTCGTCAACCCTGTTTTCGCTCATCGGATTAATCTTTCTCAGAAGATCAGTATAATCCGACTGGATCCCTCCGACGCCGAGAAGCTCTATCGCCGCCGATTTGCCACCACCGAGTTCTTCCCGCGCGACATTCGTTCCATCCTCAGCAACAAACTCAGCCTTGGCACCTTCCTCGCCGTCCCGCGCGGGTCATTTAGTCCAGACACGTGGCCCGGGTCGGACTTATTCCTCTCGGACCCACCCGAGTCATGGGCGGTTATCAGCGTCTGGAACTGTAAGGACGTGTTCACGCTCGAGGTCCGAGGCGCGTCGCGCGCGAAACGTATCCTGGCTAAAACGACGCGGATTGTGGACCGGGCGTTGCCGTTTCTGCAGCTGCCGTCGATCCCGAATTTCTTCAAGCCCTTTGGGTTTCACTTCATGTATGGGTTAGGAGGGGAAGGGCCAGAGGCGGCGAAGATGGTGAAGGCGTTGTTCGGGCATGCGCACAACCTCGCGAAGGAGCGTGGGTGTGGGGCAGTGGTGACGGAGGTTTCGAGCTGCGAACCATTGAAGTTAGGGATACCACACTGGAAGATGCTATCATGCCCCGAGGATTTATGGTGCATCAAGAGGCTCGGGGAAGACTATAGTGACGGCTCTGTCGGTGACTGGACAAAATCTCTACCTGGATTGTCCATTTTTGTTGACCCTAGAGAATTCTAA 1209 0.5302 MGEEYGRIVVLREFDPDKDRDRVEAVERICEVGPSGKLSLFTDLLGDPICRVRHSPAFRMLVAVVGEEIVGIIRGCIKTVTCGKKLSRNGNFTEPLPVYTKLAYILGLRVSPSYRRMGIGLKLVKTMEQWFRDNGAEYSYMATEKDNFASVMLFTDKCGYNKFRTPSILVNPVFAHRINLSQKISIIRLDPSDAEKLYRRRFATTEFFPRDIRSILSNKLSLGTFLAVPRGSFSPDTWPGSDLFLSDPPESWAVISVWNCKDVFTLEVRGASRAKRILAKTTRIVDRALPFLQLPSIPNFFKPFGFHFMYGLGGEGPEAAKMVKALFGHAHNLAKERGCGAVVTEVSSCEPLKLGIPHWKMLSCPEDLWCIKRLGEDYSDGSVGDWTKSLPGLSIFVDPREF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1292 402 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 181 IPR000182 GO:0016747
Lele55g1292 402 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 8 402 - -
Lele55g1292 402 FunFam Probable N-acetyltransferase HLS1-like 18 167 - -
Lele55g1292 402 CDD NAT_SF 60 138 - -
Lele55g1292 402 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 44 162 IPR016181 -
Lele55g1292 402 Pfam Acetyltransferase (GNAT) family 56 160 IPR000182 GO:0016747
Lele55g1292 402 Gene3D - 45 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1292 Lele-ChrLele55 19399716 19401191 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele55g1292 Acetyltransf_1 9.2e-17 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0349 49 2061074 2063968 Lele55g1292 55 19399716 19401191 CCT
Lele53g0193 53 1606072 1607547 Lele55g1292 55 19399716 19401191 hybridization
Lele54g0196 54 1691667 1693077 Lele55g1292 55 19399716 19401191 hybridization