Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1291 ATGGCCATAAGGCCCTTCCATTTCACCTTCCCTCCTGATAGATTCTTTTCTCTTCTTCGCGCTCCTCCGTTTTCTTCTTCTTCTTCCTCTTCTTCTTCTGGTTCTTGTCCTTGTCCTGCTTCTTCCTCTCCGTGGCGTTATAAACTTCCGCTGTATTCTCGATTGTTTTTCCCTATTTCTGTGTTCCGTCACTTCACGGCGTTGGCGGCAACCCCGTTCTCACGCGTTAGCCAGTGCTATCCGCCACCGCAACCACACGACGACTGCCTGCGGTCGTTGTCTCCATCCAACACTCTGGCGCAGAAGATTGGAAAATCCATTCGCCGATCGGGCGCTGCCTCGAAGGCGAGGGTTCATGCCGATGTCAACGTTGTCCGTCCTAAGGAATATTGGGACTATGAGTCGCTTACTGTCCAGTGGGGGGAGCAAGATGATTACGAGGTTTCGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTGTTTGAGGGCGTTCACTGCACGGATAATGAAAAGTGTATCATTAAGATTCTGAAACCGGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAACCTTTGCGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGATCAGCAGTCAAAGACTCCAAGCCTTATTTTTGAATATGTTAACAACACTGATTTTAAAGTGCTCTATCCTACACTGTCAGACTATGACATACGATATTACATCTATGAGCTTCTTAAGGCCCTGGATTATTGCCATTCACAAGGAATTATGCATCGGGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTATCATCCTGGTAAAGAATATAATGTTCGAGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGCATGATTTTTCGTAAAGAGCCATTCTTTTACGGACATGATAATTATGATCAACTGGTCAAAATTGCAAAAGTACTTGGGACAGATGAATTATATGCATATTTGAACAAGTACCGGATAGAGTTGGACCCTAATCTTGCAGCACTTGTTGGAAGGCATAGTCGGAAGCCCTGGACAAAGTTCATTAATGTCGATAATCAACATTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTGCGATATGATCACCAAGAACGACCCACTGCAAAAGAAGCCATGGGCCATCCTTACTTCAATCCTGTTAGAAGTGCAGAAAGCAGTCGGTCTCGTGCTTATTGA 1338 0.4432 MAIRPFHFTFPPDRFFSLLRAPPFSSSSSSSSSGSCPCPASSSPWRYKLPLYSRLFFPISVFRHFTALAATPFSRVSQCYPPPQPHDDCLRSLSPSNTLAQKIGKSIRRSGAASKARVHADVNVVRPKEYWDYESLTVQWGEQDDYEVSRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELYAYLNKYRIELDPNLAALVGRHSRKPWTKFINVDNQHLAVPEAIDFVDKLLRYDHQERPTAKEAMGHPYFNPVRSAESSRSRAY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1291 445 SMART serkin_6 146 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1291 445 Pfam Protein kinase domain 146 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1291 445 FunFam Casein kinase II subunit alpha 132 222 - -
Lele55g1291 445 SUPERFAMILY Protein kinase-like (PK-like) 120 434 IPR011009 -
Lele55g1291 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lele55g1291 445 CDD STKc_CK2_alpha 127 431 IPR045216 GO:0004674|GO:0006468
Lele55g1291 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA 107 441 IPR045216 GO:0004674|GO:0006468
Lele55g1291 445 Gene3D Transferase(Phosphotransferase) domain 1 223 431 - -
Lele55g1291 445 ProSiteProfiles Protein kinase domain profile. 146 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1291 445 FunFam Casein kinase II subunit alpha 223 434 - -
Lele55g1291 445 MobiDBLite consensus disorder prediction 425 445 - -
Lele55g1291 445 Gene3D Phosphorylase Kinase; domain 1 146 222 - -
Lele55g1291 445 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1291 Lele-ChrLele55 19365139 19371579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1291 144 432 Core Cell Cycle Gene Families AT1G76540 30.696 1.43e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele55g1291 Pkinase 4.5e-65 CL0016