Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1285 ATGGATACCTTGTTTCGGCTTGTCAGTTTTCAGTCTCAACCTTCTGATCCTCAATCTCTCAACAACTCCTCTAGCAGCTCTAGATCCTCCAGACAAAACAACAACAACAACTACAACTTCCACCATCATCATCACTACCACCACCAGCAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTGTCCTCCTCTTCTCCTAAACACTACTATCCTTATCATCACCACCCGTCTTCCTCCACCCCCACCACCGCCACCCCCACCACTGCTACTGCTACTACTTTCACAACCACCACTCCCACCACTTCTGATTTCTCTTTCTCCCTCTCCCCCACCACAACTGACCTTCACAACTTTGAATTCTCCGGCCGATGGGCTCACGATCTCCTCCTTGAGACTGCTCGTGCCGTCGCCGACAAGAACAGCGCGCGTGTTCAACAGTTGATTTGGATGCTCAACGAACTTGCTAGTCCTTATGGTGATACTGATCAGAAGCTCGCCGCTTACTTCCTTCAGGCTCTGTTTAGTCGGGTCACCGACTCCGGGGACCGGGCCTACCGTACGTTGGCCACCGCGTCGGAGAAAACATGCTCTTTTGAGTCGACCAGGAAGATGGTGTTGAAGTTCCAAGAGGTTAGCCCTTGGACTACTTTCGGTCACGTCGCTTCCAATGGCGCCATCTTGGAGGCCTTAGAAGGTGAGCCGAAGTTGCACATAGTTGATATTAGCGATACGTATTGCACCCAGTGGCCTACTCTTCTTGAAGCCTTGGCCACTCGCAGCGATGACACCCCTCACCTCCGGTTAACCACGGTGGTTAGCCGCCGAGCCAGTGGCTCCATCGCGGCGGTTCAGAAAGTCATGAAGGAGATAGGGACTAGAATGGAGAAATTCGCTCGGCTCATGGGTGTTCCCTTTAAATTCAGCGTTATTCATCACGCGGGTGATCTCTCAGACTTTAATTTCTCGAAATTAGATATTAAAGACGACGAGGCTCTCGCCATTAACTGTGTGAACGCGTTGCATTCCATCGCGGCCTTCGGTAATAACCGTGACATGTTGATATCCTCGTTTCGGAGATTACAACCTAGGATAGTCACTGTGGTGGAAGAGGAAGCAGATCTTGATGTTGGATTTCATGGGTTTGAATTTGTACGAGGTTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTCGAGGCACTGGAGGAGAGCTTCCCCCGAGCAAGCAACGAGCGTTTGATGCTTGAGAGAGCGGCAGGACGAGCCATCGTTGACTTGGTGGCTTGTGATCAGTCGCAGTCGTTTGGCAAGACAATACGATTGGAGGTAATTGGGATGGTTGGGAGGGGAGTTTGA 1368 0.5044 MDTLFRLVSFQSQPSDPQSLNNSSSSSRSSRQNNNNNYNFHHHHHYHHQQEDEECFNFFMDEEDLSSSSPKHYYPYHHHPSSSTPTTATPTTATATTFTTTTPTTSDFSFSLSPTTTDLHNFEFSGRWAHDLLLETARAVADKNSARVQQLIWMLNELASPYGDTDQKLAAYFLQALFSRVTDSGDRAYRTLATASEKTCSFESTRKMVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISDTYCTQWPTLLEALATRSDDTPHLRLTTVVSRRASGSIAAVQKVMKEIGTRMEKFARLMGVPFKFSVIHHAGDLSDFNFSKLDIKDDEALAINCVNALHSIAAFGNNRDMLISSFRRLQPRIVTVVEEEADLDVGFHGFEFVRGFQECLRWFRVYFEALEESFPRASNERLMLERAAGRAIVDLVACDQSQSFGKTIRLEVIGMVGRGV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1285 455 MobiDBLite consensus disorder prediction 8 37 - -
Lele55g1285 455 MobiDBLite consensus disorder prediction 71 91 - -
Lele55g1285 455 ProSiteProfiles GRAS family profile. 120 455 IPR005202 -
Lele55g1285 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 92 435 IPR005202 -
Lele55g1285 455 MobiDBLite consensus disorder prediction 8 46 - -
Lele55g1285 455 Pfam GRAS domain family 131 439 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1285 Lele-ChrLele55 19329123 19330844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1285 1 438 GRAS Transcription Factor Family AT4G37650 61.472 2.55e-175 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele55g1285 GRAS 3.9e-86 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0375 51 2155181 2158460 Lele55g1285 55 19329123 19330844 CCT
Lele52g0390 52 2282890 2288594 Lele55g1285 55 19329123 19330844 CCT
Lele53g0200 53 1674113 1675642 Lele55g1285 55 19329123 19330844 hybridization
Lele54g0204 54 1756688 1758223 Lele55g1285 55 19329123 19330844 hybridization